Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_003551_5                                                                                                                 top


Strain : Methanopyrus kandleri AV19 RefSeq :NC_003551 (chromosome circular)
CRISPR id : NC_003551_5
DR consensus (36 bp) : GTTTCATTACCCATATTATTGCGGGTTAATTGCGAGNumber of repetitions :11
Begin Position : 1362505 End Position : 1363454

1362505GTTTCATTACCCGTGTTATTACGGGTTAATTGCGAGACTTAGGCGTTGCACAAAACGTCTGGGACGAGTACCTCGCGCCTGGCGCAGTCGGGTTTCATTACTCA 1362608
1362609TATTATTTACCCATATTATTACGGGTTAATTGCGAGTTATAGGGCAGGAGCACCAGCGGGATCACCGATGGCTCGGTACGTCATTGA 1362695
1362696GTTTCATTACCCATATTATTGCGGGTTAATTGCGAGAACGTGTGTTGGAAGAGCATCTGGGACAACATAGAGGCAGACTTAAGGTGCAGGATTA 1362789
1362790GTTTCATTACCCATATTATTGCGGGTTAATTGCGAGTTTTGCGGAGTAATCCCATGTTGGTTGTCGGTGACCGTAGAGTGCGGGATAGA 1362878
1362879GTTTCATTACCCATATTATTGCGGGTTAATTGCGAGCCCGCGGACAAGGCTTCGGTCTTGTGGAGGGTCTATTGGAGCAGTA 1362960
1362961GTTTCATTACCCATATTATTGCGGGTTAATTGCGAGGGGTTGCAGTTACACGGCGTATATCATGGCGTTCCCAGTGGAGTGGTCAGT 1363047
1363048GTTTCATTACCCATATTATTGCGGGTTAATTGCGAGACTCGGTGGACACAGAGCTCGCCGCCGCGCTATCGGCACTATGGGAATCAGTC 1363136
1363137GTTTCATTACCCATATTATTGCGGGTTAATTGCGAGGTGTCCGGTTTGCGACTCTTAGGGGGATAACGACTTTCACTTCCGCGTCCT 1363223
1363224GTTTCATTACCCATATTATTGCGGGTTAATTGCGAGCCGGCGCGTTAGGCCTCAGCAACGTGGAGAAAGCGATACTTTATGACGATGTCCTTAAGGAGC 1363322
1363323GTTTCATTACCCATATTATTGCGGGTTAATTGCGAGAAGTATCACAGCCAGGGCACGGACGAGACAGCGTACTGAGAGGGGCCAGAGTAGCAACAA 1363418
1363419GTTTCATTACCCATATTATTGCGGGTTAATTGCGAG1363454
Left flanking sequence : Till position 1362505 (length bp)
GCGAGAAGTTGACGTTTCATTGTCTATGCGAGCTAGCATCGAGAGGCCCCGTGGGCGGGAACAGGATTCT
GGAAAATACACAGTCGCCTTGAAGGAACGT
Right flanking sequence : From position 1363454 (length bp)
GGCGGGCGGTTTTCCCGGAGGATCACCCTTTACACTCCGAAACCACCGAAGAGATTCCCCACCCCTCACC
CGCCAGAGCCAGTGTACTGGTCCTATTTAA
Print the CRISPR sequence : From position bp To position bp