Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_008340_5                                                                                                                 top


Strain : Alkalilimnicola ehrlichei MLHE-1 RefSeq :NC_008340 (chromosome circular)
CRISPR id : NC_008340_5
DR consensus (28 bp) : GGTCTATCCCCGCAGGCGCGGGGGAGCCNumber of repetitions :93
Begin Position : 1073961 End Position : 1079602

1073961GGGCGATCCCCGCAGGGGCGGGGGAGCCGTCACCACCCTCATCAACCAGTCCGGCTTCCGG 1074021
1074022GGTCTATCCCCGCAGGCGCGGGGGAGCCGAGGCCCTACCGGAGTGGGGCTTGGCTAATAGA 1074082
1074083GGTCTATCCCCGCAGGCGCGGGGGAGCCAAGGCTCAGGCGCCGACGCAGTCCACCGGCGAG 1074143
1074144GGTCTATCCCCGCAGGCGCGGGGGAGCCAACACGCTAGCCGCCCCGGGAAACTTGGCCCGG 1074204
1074205GGTCTATCCCCGCAGGCGCGGGGGAGCCAGCCGGCGCAGGTGCTCGCACCCGTACTGCAGA 1074265
1074266GGTCTATCCCCGCAGGCGCGGGGGAGCCTTAAGGTGGAGGTGAGTAATGATGGTGAAACTA 1074326
1074327GGTCTATCCCCGCAGGCGCGGGGGAGCCTGCTAGAACAGGAAATCAAGGCGCTGCGTGAGG 1074387
1074388GGTCTATCCCCGCAGGCGCGGGGGAGCCCGGGGACTACACCGGGGAAAAGCACTTGCAATG 1074448
1074449GGTCTATCCCCGCAGGCGCGGGGGAGCCTGGTATCCCGAGGAGCTAGCGACGGGTGATATC 1074509
1074510GGTCTATCCCCGCAGGCGCGGGGGAGCCCCGGGCGGGACCCTCGGGCACCGGCGCCCACCG 1074570
1074571GGTCTATCCCCGCAGGCGCGGGGGAGCCGCCGGGTTGTCCGGGTTGGGGTCTTGGGGTCAA 1074631
1074632GGTCTATCCCCGCAGGCGCGGGGGAGCCGATGCCGAAGAGTTCGAGGAAACGATTTACAAG 1074692
1074693GGTCTATCCCCGCAGGCGCGGGGGAGCCGCAGGAAACACACCTGATGCCGGCCCTCACTCGG 1074754
1074755GGTCTATCCCCGCAGGCGCGGGGGAGCCTGCAAGACTGGCGCAGGAGCGCGGAGAAACAGA 1074815
1074816GGTCTATCCCCGCAGGCGCGGGGGAGCCGGATCAAGTGGGCGCTGACTGCCGTGGGCCTGT 1074876
1074877GGTCTATCCCCGCAGGCGCGGGGGAGCCGAGTTGGCAAGTATCCATTATTGACCCCTTCAG 1074937
1074938GGTCTATCCCCGCAGGCGCGGGGGAGCCCAGTACCAGGTTTCCGGGTTCGACTCGGCCTCA 1074998
1074999GGTCTATCCCCGCAGGCGCGGGGGAGCCTCGGAGTCAATGTGGAGGGTCGGGTACTGCGGG 1075059
1075060GGTCTATCCCCGCAGGCGCGGGGGAGCCTCCGTCTTCTGGATATCAAGACCAGCCTCTCCA 1075120
1075121GGTCTATCCCCGCAGGCGCGGGGGAGCCTGGACCACCAGGCTGCTGGCCACTCGGTGCCGG 1075181
1075182GGTCTATCCCCGCAGGCGCGGGGGAGCCCCCGGCTGGTACGGATCGACCGCCTCAGCAAAG 1075242
1075243GGTCTATCCCCGCAGGCGCGGGGGAGCCTGTGACCATACCTCCACTTCCTCACCGCGGTGC 1075303
1075304GGTCTATCCCCGCAGGCGCGGGGGAGCCGTACCGTCATCCCCTACAACCAGCCACACACCG 1075364
1075365GGTCTATCCCCGCAGGCGCGGGGGAGCCACCCGGGGCCGGATCATCGCCCAGGTGGAGAGG 1075425
1075426GGTCTATCCCCGCAGGCGCGGGGGAGCCACGGCAGCACGGAGGAGCAGGAGATGGCCCGAG 1075486
1075487GGTCTATCCCCGCAGGCGCGGGGGAGCCACCAAGCCTGAGACCGTACCTGGTGCCGCCTGG 1075547
1075548GGTCTATCCCCGCAGGCGCGAGGGAGCCGAAGTGGACGCCTTTCGAGATCATGCAGCTGCG 1075608
1075609GGTCTATCCCCGCAGGCGCGGGGGAGCCCAGAACCCTAATCTGGAGGTCCGGGCCGGGCGA 1075669
1075670GGTCTATCCCCGCAGGCGCGGGGGAGCCCAGGTGCTGCACGGCAAGGTGCGCGTTGCGGAG 1075730
1075731GGTCTATCCCCGCAGGCGCGGGGGAGCCGCAACGAATACCAGCGCGCCGAGATCAACGACA 1075791
1075792GGTCTATCCCCGCAGGCGCGGGGGAGCCGCGCTCGGGTGAGCGAGCGGGCTGCTGGGGTTG 1075852
1075853GGTCTATCCCCGCAGGCGCGGGGGAGCCCACCACGCGACCGGCACCGCCCCGGGCTTGTAG 1075913
1075914GGTCTATCCCCGCAGGCGCGGGGGAGCCGCCGAGGGTACAGCTTGACCGACCAGCCTCGCG 1075974
1075975GGTCTATCCCCGCAGGCGCGGGGGAGCCTTGGCGCGGGGTGGCCGAGCCGGGAGGTGAACG 1076035
1076036GGTCTATCCCCGCAGGCGCGGGGGAGCCACCAGGTGGGCCAGGAACTCCTCGTCGAACTCG 1076096
1076097GGTCTATCCCCGCAGGCGCGGGGGAGCCCGAGGTCAGGAGGAAGTATGCCCCCCATCCCTG 1076157
1076158GGTCTATCCCCGCAGGCGCGGGGGAGCCTTCCAGACCGACACCATCAGCTGCCCGCGGTAG 1076218
1076219GGTCTATCCCCGCAGGCGCGGGGGAGCCAGCGGCCAGATCGATGCGATCCTCACCGACCAG 1076279
1076280GGTCTATCCCCGCAGGCGCGGGGGAGCCCAGAAAACAGCCCCGCCCACGCGGCGGGGCACA 1076340
1076341GGTCTATCCCCGCAGGCGCGGGGGAGCCATACTCCTTCAGTCGGCTCTCTGCCTGCTTGCC 1076401
1076402GGTCTATCCCCGCAGGCGCGGGGGAGCCTGGGCCTTGAAGTAGCCCTCGTCGTCTGCGTGG 1076462
1076463GGTCTATCCCCGCAGGCGCGGGGGAGCCCAGGTGCTGCACGGCAAGGTGTCCGTCCGCGAG 1076523
1076524GGTCTATCCCCGCAGGCGCGGGGGAGCCGGTGGTCAGGCCCGGCAGCGGGATCTCGCCCAG 1076584
1076585GGTCTATCCCCGCAGGCGCGGGGGAGCCGCGGATAAACTCTTGCTTCGATGCCGCGTCAAG 1076645
1076646GGTCTATCCCCGCAGGCGCGGGGGAGCCGCCAACGTGCGCCGGTGGGAGTCCCCGGAGGAG 1076706
1076707GGTCTATCCCCGCAGGCGCGGGGGAGCCCGCGTCGGGCTGCTGACACGCCAGGCGCGGGAG 1076767
1076768GGTCTATCCCCGCAGGCGCGGGGGAGCCACCCTTTAGATGATTGGTACGGCTTGAGCCCGG 1076828
1076829GGTCTATCCCCGCAGGCGCGGGGGAGCCAACAAACTCGTGCAGAGTGGATGATGGTCCAAA 1076889
1076890GGTCTATCCCCGCAGGCGCGGGGGAGCCAAGCGCATCATTCCGCCGGGGGGTACGCTGGAG 1076950
1076951GGTCTATCCCCGCAGGCGCGGGGGAGCCAGCAACACTAAGCCGTAACGCAACCCCTTGCCG 1077011
1077012GGTCTATCCCCGCAGGCGCGGGGGAGCCCCGTTATCGCCCATTTCCTGCGCGCTGGCGGTG 1077072
1077073GGTCTATCCCCGCAGGCGCGGGGGAGCCCTCGAGGCCGCCGCCGGTATTCTGCGCCTCGAC 1077133
1077134GGTCTATCCCCGCAGGCGCGGGGGAGCCAGAGAGCGTATTCCAGTACGTGGAGGTGTCCGA 1077194
1077195GGTCTATCCCCGCAGGCGCGGGGGAGCCCTCTTGGTGCGCCTCTTCCATCTCGCGCTCTAG 1077255
1077256GGTCTATCCCCGCAGGCGCGGGGGAGCCCGGCCGCATGTTGCGCTTGTTCGATCACGGTAA 1077316
1077317GGTCTATCCCCGCAGGCGCGGGGGAGCCTCGCGATTGGCGTTAATGCCAAATTGCTTAAGG 1077377
1077378GGTCTATCCCCGCAGGCGCGGGGGAGCCGATATCAGCGGCGCGCAGGAGATTCGCTGGACG 1077438
1077439GGTCTATCCCCGCAGGCGCGGGGGAGCCAAAGTCAGTTGCTTCAGTTGCTTTAGGGGTAAAG 1077500
1077501GGTCTATCCCCGCAGGCGCGGGGGAGCCCCGGAGGCAAACTGCTCAATCTGCCCCGGCAGG 1077561
1077562GGTCTATCCCCGCAGGCGCGGGGGAGCCAGGTAGACATTGGCCCATAGCTGGCTGGTCAGG 1077622
1077623GGTCTATCCCCGCAGGCGCGGGGGAGCCCTCCCTGGGCATCCCGCGTCAACTCCCTGCCGG 1077683
1077684GGTCTATCCCCGCAGGCGCGGGGGAGCCACGTTGGGCTTGTGCTTCTTGCCCGGGGGCAGG 1077744
1077745GGTCTATCCCCGCAGGCGCGGGGGAGCCCCACTCGGCGCACCGTGCGCCTCGGTCTTTTCG 1077805
1077806GGTCTATCCCCGCAGGCGCGGGGGAGCCTGGGAGAAGGCCCACCCCGAGTTTCTAGCCACG 1077866
1077867GGTCTATCCCCGCAGGCGCGGGGGAGCCCCAGACCCGAGAAGTTGGACCGAGGAAGGTCGA 1077927
1077928GGTCTATCCCCGCAGGCGCGGGGGAGCCTTCAGTTCGTCTGCGCAATCCTCGATGGTGAAA 1077988
1077989GGTCTATCCCCGCAGGCGCGGGGGAGCCGGGCCTGCTCGGGCTGGCCGACGGCGATATTGA 1078049
1078050GGTCTATCCCCGCAGGCGCGGGGGAGCCGGAATATCGGCCACGAATGTTTTTCCATCACTG 1078110
1078111GGTCTATCCCCGCAGGCGCGGGGGAGCCACTTCAAAGTCGTGCTTGAGCGGCGTTGCCACG 1078171
1078172GGTCTATCCCCGCAGGCGCGGGGGAGCCGCAGGCATGAGCGTGCATATCCACACGGACCTA 1078232
1078233GGTCTATCCCCGCAGGCGCGGGGGAGCCTTCGGGACGCGCCGCATGGCGGAACGCCCGTGG 1078293
1078294GGTCTATCCCCGCAGGCGCGGGGGAGCCTTCTGGAAAGGCATCGCAGCCGAACTGGAGTGG 1078354
1078355GGTCTATCCCCGCAGGCGCGGGGGAGCCGGAGCCGTCCGGGGTCTGCTCTTCGGACTGCAG 1078415
1078416GGTCTATCCCCGCAGGCGCGGGGGAGCCACGCCACCATCCCGGCCCAGCTCACACCTTCCA 1078476
1078477GGTCTATCCCCGCAGGCGCGGGGGAGCCCGCTATCGGACGCGCCGGGCTCTACTCCGATAA 1078537
1078538GGTCTATCCCCGCAGGCGCGGGGGAGCCTTCGCCAGACTGCCCCACTCGGTGCTGATAAAA 1078598
1078599GGTCTATCCCCGCAGGCGCGGGGGAGCCTGACAGTGCCAGGCCCGCCCGCTCGCTGACCCA 1078659
1078660GGTCTATCCCCGCAGGCGCGGGGGAGCCTCGTCTTCGGTGCTATCCTGTGTGGCAGTCTGA 1078720
1078721GGTCTATCCCCGCAGGCGCGGGGGAGCCTTCTAGCCTCTCTTTGTGCCGGTTCTCTTCCAG 1078781
1078782GGTCTATCCCCGCAGGCGCGGGGGAGCCGCAAGAATGTGCCGGTGACCTCAATGGACTCAA 1078842
1078843GGTCTATCCCCGCAGGCGCGGGGGAGCCTTCGCTGAGGCGCTCCTGGTGCTGTGCCTCAAG 1078903
1078904GGTCTATCCCCGCAGGCGCGGGGGAGCCCTCGTGTTCGAGTTCGAGCGCGGGTTGTTCAAG 1078964
1078965GGTCTATCCCCGCAGGCGCGGGGGAGCCTCGTTCTGTAGCTGGATCAGCTCGCCTTCCAGG 1079025
1079026GGTCTATCCCCGCAGGCGCGGGGGAGCCATTACCACGGCGGGTGGGAAGAAATACACTACA 1079086
1079087GGTCTATCCCCGCAGGCGCGGGGGAGCCGGCTTGCTCGGCAAAGAGCTGCAGCGGCAGCGA 1079147
1079148GGTCTATCCCCGCAGGCGCGGGGGAGCCCGGCAGCGAGCTGGCAGGGAATTGGGGCTGTGG 1079208
1079209GGTCTATCCCCGCAGGCGCGGGGGAGCCAGCCCTCGCCGCCGCCGGTGCCGGCATGGATCG 1079269
1079270GGTCTATCCCCGCAGGCGCGGGGGAGCCACCAGCTTGAGGCCGCTCTGCCATTCCCAGACG 1079330
1079331GGTCTATCCCCGCAGGCGCGGGGGAGCCCGGTTCTGCACGCGCCGCACCGGGCCGGTGATG 1079391
1079392GGTCTATCCCCGCAGGCGCGGGGGAGCCGGCGCTACTGGCCATAGGCAGATCGAGATCTAC 1079452
1079453GGTCTATCCCCGCAGGCGCGGGGGAGCCTACCGAATCACCTCATCGGATATGGCAACCGCG 1079513
1079514GGTCTATCCCCGCAGGCGCGGGGGAGCCGTCGAGGTAGAGCTGCTGCGTCGACAACTCCGG 1079574
1079575GGTCTATCCCCGCAGGCGCGGGGGAGCC1079602
Left flanking sequence : Till position 1073961 (length bp)
TGCTCTGCAGCGCGTGTCTCGGGGTGGGCTAGCTTGCCGGATGGCGCACCTGCCATCCTCATTCTTGTTC
CCGTCCCCTGTCCAGCATCGCCGTCTTGGG
Right flanking sequence : From position 1079602 (length bp)
TCTAGACGATAATAGGCTGAATTTACTGAATTGTTAAAGACCGAGTGTTAATTTGGGCGGCGCGCGAGCA
CGATGCCATCAATCTCCTCAAGGGCTACTG
Print the CRISPR sequence : From position bp To position bp