Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_008698_8                                                                                                                 top


Strain : Thermofilum pendens Hrk 5 RefSeq :NC_008698 (chromosome circular)
CRISPR id : NC_008698_8
DR consensus (24 bp) : CTCTTAGTCTTGCTGATTTTGAACNumber of repetitions :9
Begin Position : 1281906 End Position : 1282413

1281906CTCTTAGTCTTGCTGATTTTGAACAAGAAGCAGGGATCCCCGCACGCGAGGCATGGCTTACG 1281967
1281968CTCTTAGTCTTGCTGATTTTGAACTGACTTAGACATCAATTTCACTGAGAGGTGTCT 1282024
1282025CTCTTAGTCTTGCTGATTTTGAACGAATTGGACACGAGCTTCTTCTCTGGTTGCCGGC 1282082
1282083CTCTTAGTCTTGCTGATTTTGAACTGTGGGCCCTCCTGCCGACCCGGAACACTACCTCTA 1282142
1282143CTCTTAGTCTTGCTGATTTTGAACAAGGAAAGAAGAAGCTCTGGAGCAGGTATTCGACGGGCT 1282205
1282206CTCTTAGTCTTGCTGATTTTGAACGAAGCACCGAAAGATCTGCTGTGGATTCTCAAGTTAG 1282266
1282267CTCTTAGTCTTGCTGATTTTGAACCGGCGTTGAGAAGATTGCGAGCCTAATGAGCAGACGTCACGT 1282332
1282333CTCTTAGTCTTGCTGATTTTGAACCGTCATAGCGGTAAAGCTGGCGAGGAGGGTCGG 1282389
1282390CTCTTAGTCTTGCTGATTTTGAAC1282413
Left flanking sequence : Till position 1281906 (length bp)
AAAGGCTCCTTCAAAAACCGCGAGCTATAGACGTTCACAGAGCAACACTTTCAGTCTTGTCAATTAAAAC
TCTTCGACCCAACACTTCGCAGAGTCCTCT
Right flanking sequence : From position 1282413 (length bp)
TGAGGGGGTTTGTGGGGGCTTCTTCCCGAAGCCCTGCTTAACATTTCTCTGTGGCGGTATAAAACGTTTT
CTGTTCCCTTCTTCCCGTTGAGAACAAATC
Print the CRISPR sequence : From position bp To position bp