Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_013768_2                                                                                                                 top


Strain : Listeria monocytogenes 08-5923 RefSeq :NC_013768 (chromosome circular)
CRISPR id : NC_013768_2
DR consensus (28 bp) : TTTTAGTTACTTATTGTGAAATGTAAATNumber of repetitions :8
Begin Position : 539210 End Position : 539686

539210TTTTAGTTACTTATTGTGAAATGTAAATACAGATCAAACTCCGGAAGGGTGATTGTAAATGGCG 539273
539274TTTTAGTTACTTATTGTGAAATGTAAATTGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGCG 539338
539339TTTTAGTTACTTATTGTGAAATGTAAATGCGATTTTTGTCAAAGGGACAGCGATGGGTTACAAG 539402
539403TTTTAGTTACTTATTGTGAAATGTAAATTTTTCTACTCCTGCTTCTAAAATGTCGTTTATAAG 539465
539466TTTTAGTTACTTATTGTGAAATGTAAATCTAAAACATCCTTCACTGTATCAACTCCTTTCTATA 539529
539530TTTTAGTTACTTATTGTGAAATGTAAATAAAATAGGAGGAAATAAATTATGACTATCAAATTAAG 539594
539595TTTTAGTTACTTATTGTGAAATGTAAATTTTGTTGAATCAACGGATATAGATTTTACAATTTCG 539658
539659TTTTAGTTACTTATTGTGAAATGTAAAT539686
Left flanking sequence : Till position 539210 (length bp)
GGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTCTTTGTAGGTCGACAGAAATAGCTCTTTGAGGT
AAGATGGGAGTAAGAAGAAAAGTTAGTGGG
Right flanking sequence : From position 539686 (length bp)
TTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATTGTTTTATTCAATCATTCAGAATTGGTAAATGCA
GAAGCAGCAAAATAACCAAAAGTAATGACT
Print the CRISPR sequence : From position bp To position bp