Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_013887_9                                                                                                                 top


Strain : Methanocaldococcus sp. FS406-22 RefSeq :NC_013887 (chromosome circular)
CRISPR id : NC_013887_9
DR consensus (31 bp) : GTTTCCATCCTCCAAGAGGTCTGATTTTAACNumber of repetitions :7
Begin Position : 554503 End Position : 554947

554503GTTTCCATCCTCCAAGAGGTCTGATTTTAACTAGTCATAAAGATTAGGAATTTTAAGTTGTGATGTAACAG 554573
554574GTTTCCATCCTCCAAGAGGTCTGATTTTAACACGATTATTCAGATGAATTATTAAGCTTTTTAATCGAA 554642
554643GTTTCCATCCTCCAAGAGGTCTGATTTTAACTAGAAACAAAACACTACGCAGTTGTTAGGCAGAAAAA 554710
554711GTTTCCATCCTCCAAGAGGTCTGATTTTAACATTTGAGAGTTATAACAGATATATGTATGTTCATCGA 554778
554779GTTTCCATCCTCCAAGAGGTCTGATTTTAACTTAAGTATTTTAGAGAATTTATAAGCCCATATAACGT 554846
554847GTTTCCATCCTCCAAGAGGTCTGATTTTAACCACTTTCATAGCAGGGTCTACAACTTCAACGAATGTAAA 554916
554917GTTTCCATCCTCCAAGAGGTCTGATTTTAAC554947
Left flanking sequence : Till position 554503 (length bp)
TTATTTTACACCTTTTATAACTTTTTTATTTTTTTATATAGTAATAATCTTATTTTAACAGTGAGAAAGA
TATTTTATATCGAATTCGTAGAGGTGTGTC
Right flanking sequence : From position 554947 (length bp)
AGGGCAATCATCGACAATATAATTTTAATCACTCTTCTAATATTTAAGCTTTTCGGAGGTATATTTTTCT
AAGGGTAAATAACTATCTTTATTTATAAAC
Print the CRISPR sequence : From position bp To position bp