Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_014644_1                                                                                                                 top


Strain : Gardnerella vaginalis ATCC 14019 RefSeq :NC_014644 (chromosome circular)
CRISPR id : NC_014644_1
DR consensus (28 bp) : GTATTTCCCGCATACGCGGGGGTGATCCNumber of repetitions :31
Begin Position : 836407 End Position : 838265

836407GTATTTCCCGCATACGCGGGGGTGATCCCCTTCACGTTCTTTTGCTTTACAAGTATCCTGC 836467
836468GTATTTCCCGCATACGCGGGGGTGATCCCGGCACGGTTAAGCCGTTTGATATGCCGCTCCC 836528
836529GTATTTCCCGCATACGCGGGGGTGATCCCTCATCATTGGCTACACTCTCTGGATGCTTTAA 836589
836590GTATTTCCCGCATACGCGGGGGTGATCCCCGTAAAGTTTGCATAATGCGGCAACCAGATGC 836650
836651GTATTTCCCGCATACGCGGGGGGTGATCCTGTGTTTTTACGAGGTTTTATACCTTCAAAAAG 836712
836713GTATTTCCCGCATACGCGGGGGTGATCCTCGTTAATGCGTGCTAAAAAGTTTTGTAAATAC 836773
836774GTATTTCCCGCATACGCGGGGGTGATCCTTATAAGCTGTAATTATAGGTGTAATATCTTTA 836834
836835GTATTTCCCGCATACGCGGGGGTGATCCTGGTTTGACGGTTCAGAAACAGATGTTTATGTA 836895
836896GTATTTCCCGCATACGCGGGGGTGATCCTATCAATTTAAGAGCGAAAAGAAAAGTTTTTAT 836956
836957GTATTTCCCGCATACGCGGGGGTGATCCCCGATGCGCAATGAGTGATTATGATTTTAGAGC 837017
837018GTATTTCCCGCATACGCGGGGGTGATCCCCGATGCGCAATGAGTGATTATGATTTTAGAGC 837078
837079GTATTTCCCGCATACGCGGGGGTGATCCCACTCTTGTAGATGCTGTGCTTGAGCGGCTTAT 837139
837140GTATTTCCCGCATACGCGGGGGTGATCCGCGTCGTGCCGCGGCGTGCGATAGTGTCATCGA 837200
837201GTATTTCCCGCATACGCGGGGGTGATCCTTGTACTAGGTGGCGCAATCGATAGTTTTATTG 837261
837262GTATTTCCCGCATACGCGGGGGTGATCCTATGGCATTAAACGGCATTGACATATCATGGTA 837322
837323GTATTTCCCGCATACGCGGGGGTGATCCTATTTTCCTTATTTTGAGCTAATAATAAATTTA 837383
837384GTATTTCCCGCATACGCGGGGGTGATCCTAATCAAATTATTCGGATACTAAAAACCAAACC 837444
837445GTATTTCCCGCATACGCGGGGGTGATCCTCGTCATCACTCCATCCTTAAGCACAGGCTCAA 837505
837506GTATTTCCCGCATACGCGGGGGTGATCCTGAGCTTGTAAACGCTCTTGTAGATGCTGTGCT 837566
837567GTATTTCCCGCATACGCGGGGGTGATCCGTATGATGCATTGACGTGACATCTAAAGAACAA 837627
837628GTATTTCCCGCATACGCGGGGGTGATCCCTAACACGTTAGCAGATGTAGCCATTCGTGAAC 837688
837689GTATTTCCCGCATACGCGGGGGTGATCCCAAACGTTCTTCATTGCTTGCATTGCAAAATTA 837749
837750GTATTTCCCGCATACGCGGGGGTGATCCCCCAATGGCTTCCTCATCTCTAGCACGCTGCGC 837810
837811GTATTTCCCGCATACGCGGGGGTGATCCCTTGTATTCTCAATCAGAGAATACTTTGAGTAT 837871
837872GTATTTCCCGCATACGCGGGGGTGATCCCGAAGCCTGCGAAGTGTTCCTGCTGGAATGTTT 837932
837933GTATTTCCCGCATACGCGGGGGTGATTCCACGCCCGAATTGGGTATACTAAGTGTGTCGTT 837993
837994GTATTTCCCGCATACGCGGGGGTGATCCTGTCAAGTGTACCATCTTTTAATTCTTGTGCTA 838054
838055GTATTTCCCGCATACGCGGGGGTGATCCCGTATCATACTTTCTGAGTTTTGTCCTTATTGT 838115
838116GTATTTCCCGCATACGCGGGGGTGATCCCGAGTTGAGCGGCAAAGTCGAACATGAAACACA 838176
838177GTATTTCCCGCATACGCGGGGGTGATCCTAAGCACCCTAAAAACGCGGCGGGTATAACCAC 838237
838238GTCTTTTCCGCATACGCTGGATAAAACC838265
Left flanking sequence : Till position 836407 (length bp)
ATTTTGAAGGATTGTGTGCAACAATGGGTTAATTTTGAAAAGTAAATAGTTTTTACTATTTAGTCTTGGA
AAAATAGCTATTTTATTGGGATTTTTAAGT
Right flanking sequence : From position 838265 (length bp)
TACATGTGCGGCAAGTGTGGTTGTAGTAGTCTAGTGGTGGATATGATAGCGGACGCACAAGTGGAGGTTA
AAACGCTACGCGGCGTATTATATCGCGCGC
Print the CRISPR sequence : From position bp To position bp