Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_015587_6                                                                                                                 top


Strain : Hydrogenobaculum sp. SHO GCF_000215065 RefSeq :NC_015587 (chromosome circular)
CRISPR id : NC_015587_6
DR consensus (29 bp) : CTTCTTAACCCACACGGTTCAGATGAAACNumber of repetitions :18
Begin Position : 928075 End Position : 929220

928075TTTCTTAACCCACACGGTTCAGATGAAACTATTATTACACACCTTCCACAACACATTTAAAGCAA928139
928140CTTCTTAACCCACACGGTTCAGATGAAACAAATTTCTTTCTCTTTGGCTTCAATCTTTCGTAAAG928204
928205CTTCTTAACCCACACGGTTCAGATGAAACTGTCCATCCCACGTTAAAGATTTAGCGTAGTAGATAG928270
928271CTTCTTAACCCACACGGTTCAGATGAAACAGTCCAATTTATAAAGTCTTGCACTGCTTGATTGACT928336
928337CTTCTTAACCCACACGGTTCAGATGAAACACTTTGTTGAAAGGAACATTAACAATGTAAAAGAAGTA928403
928404CTTCTTAACCCACACGGTTCAGATGAAACTCAGTCCATCATTGTCTGTGACGCTAAAATGTGT928466
928467CTTCTTAACCCACACGGTTCAGATGAAACTGTGTTTAGTTTGACAGGGTCTAATATGCCAAGCCAT928532
928533CTTCTTAACCCACACGGTTCAGATGAAACTTGCGAGAAAAGAAAATGAAGAAAATCTTAAAAGG928596
928597CTTCTTAACCCACACGGTTCAGATGAAACCGTTGTAAGCAAGTAGTTCAATCGCAGCGTCCATGAT928662
928663CTTCTTAACCCACACGGTTCAGATGAAACAGCTGTGGATTAGGATTTTCAAACTCTTAGAACAAGC928728
928729CTTCTTAACCCACACGGTTCAGATGAAACAGAATCATTAGGATTGTTTGCATTTGATATACAAGA928793
928794CTTCTTAACCCACACGGTTCAGATGAAACACACTTATACACTCTACACCAAAGCATAAACTCTGGA928859
928860CTTCTTAACCCACACGGTTCAGATGAAACCAAGTTTTGAATTTCAAACACCATTCCCTAATTTAA928924
928925CTTCTTAACCCACACGGTTCAGATGAAACTATGATTTGTATCAAGAAATAGAGTATTTTTTTATGATATGG928995
928996CTTCTTAACCCACACGGTTCAGATGAAACATATCATTTTTATAGATTAGAGTCAATATTGTAAAA929060
929061CTTCTTAACCCACACGGTTCAGATGAAACGCGATATTAAAAAATGAAGATTTCAAGCCTGATAGAGG929127
929128CTTCTTAACCCACACGGTTCAGATGAAACCTTCCAAAGATACAGTTTAAATTTGTAGATGCCAA929191
929192CTTCTTAACCCACACGGTTCAGATGAAAC929220
Left flanking sequence : Till position 928075 (length bp)
TCAATGCACAAGTTTACTACATCGTGAACACATACTTTTAACAAGGTGTGCGCTCACACTCTATCTGAAC
TCATACAGTATTTAAAGGATACGTTTTCTT
Right flanking sequence : From position 929220 (length bp)
CAGAAATCACTACTCCTAATATTATATAGTGTATCAATGGTTTTGTCAAGGGGGTACCCCTCGCAAATGA
AGGTAATTTTCCGAAAATGCCAGATTCTGC
Print the CRISPR sequence : From position bp To position bp