Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_015681_5                                                                                                                 top


Strain : Thermodesulfatator indicus DSM 15286 RefSeq :NC_015681 (chromosome circular)
CRISPR id : NC_015681_5
DR consensus (37 bp) : GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACNumber of repetitions :48
Begin Position : 1410352 End Position : 1414024

1410352GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACATTATCAGAGTAATATGTATACTGTTTTCTGAAGCCAACT 1410428
1410429GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACACATAAGCCCGCTCTCTTCGACCTCCTCGAGATACTCCTC 1410505
1410506GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTGCCTCTCCTTCCTCAATCCAGAGTTCGAGGCTTCCGCCAT 1410583
1410584GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAATTTAACTTTTGCCAAATACTCTTTTTTCTTTTCCATC 1410659
1410660GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCCACTCAATGAGAGCGGATGGCTTGTCGGAGACGACTTTT 1410736
1410737GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTCAATGAGAGCTGGTAATTTAACAAATAAATTATTTCTT 1410812
1410813GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCCCTGGCACAGTCGGGACAAACGTTCATATAGTGACCTATTAT 1410892
1410893GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAGTCGTGCCCGATGAACAAAACCACACCTCAATAGAGCCACCA 1410972
1410973GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCCCGTAGTTACGGGCTGCTATAGCCAGAGTACTCGGGTTTG 1411050
1411051GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACATTACTTCCATTTCTTTACCTCCCTTTTCTTATTTTACT 1411126
1411127GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACGGACTCACAAAGAGAGGTCCTTTGAAAATCCTCGGCCCCGTT 1411205
1411206GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTCTTAAGAAAGGAAGCTGTTGCTTCTTTTATTTTTTCTC 1411281
1411282GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTTCTTTTCCATCTCTCTTTACCTCCCTTTTCTTATTTTACTT 1411360
1411361GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTTTTTCCATAGCGCTGCTCCCCTTTTTTTGCTTAACTTACTA 1411439
1411440GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTCTATAAAATAAAATTGAAGCTCTGCCTTTCCATTTC 1411513
1411514GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCCCCGCTCTCCCTTCTTTCCTTGTCCTTACGCTACATTGTAAG 1411593
1411594GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTTGGAGACACTCGGGGCATGCATAACTAAAAGAAAGGT 1411668
1411669GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACGTTGATTACTATTAATACTATTTTTTTCATTTTTTCCT 1411743
1411744GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTATAACCATTGTTTTCTAATACCTTATTAATGACACTAG 1411819
1411820GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAGTCCTGAGGCCTTCGGTAAGAACAAGAAACAAAAAAAGC 1411896
1411897GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACGAGACGACCTTTACGGTCGTCCCGGATACATCAAACCAC 1411972
1411973GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACGTCTCACAAAGAGAGGCCCTTTGAAAATCCTCGGCCCTGT 1412049
1412050GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCAGACAAGCTGGCTCTCAAAATACGCCGTTTGGCGGAGAT 1412126
1412127GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCCTTAGCAGGCCTCCAGGCCTTGTCAGGAAACCTCAGGACC 1412204
1412205GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTCAACATCAGATAAATAACACTTCACTATGTATTCCCT 1412279
1412280GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCACACAAGACCATCATTCATTCCAGCCACATAGGTCTGG 1412355
1412356GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTGGCAATAGGTAAGAGTCCAGTTGCTGTGGCCAGTAAGCT 1412432
1412433GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAAACCACAACACAACTGTACTGTTCCTTAGCCTCTCAATAC 1412510
1412511GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACACTATCAGCCAATTTAACTTTTGCCAAATACTCTTTTT 1412585
1412586GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAACTGTGTATTCCACATTGTCTTCTAACCTAACTGCTG 1412660
1412661GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACGTAGCATGGTGATTTACTCGAAATATTACTTTGCCCAGCCAGGAC 1412742
1412743GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTATACTCTTCAAACTCGCCATAGAGCTGCTTCAGCTCTATG 1412820
1412821GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAGGTCATCTTCTATAGAAAAACTGTAAAAAAGTTTAAAACA 1412898
1412899GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCACTTCTTCTTCCCAAGGACATTCGACTCCTGCAGGCTTCTC 1412977
1412978GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTGCGTTGCAGGGTGGTAAAAAACGAGCCATTCTGAGCCCT 1413054
1413055GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAGTTGTCGCAGGTCCATAGGACGGCTGATTCCCAACCGTG 1413131
1413132GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTCTCTCTTCTCGCTCCTGCAACGTAATGCCGTTAAGGTGTTCG 1413211
1413212GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTTGGTCCAAGGGAACACGAAATACTTAAGTCTTCCTCAATAAC 1413291
1413292GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTCAATGAGCCAATCTATTATTTCTTGGCGGGAGAGCATC 1413367
1413368GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTAATTACCCTCAACGACCAGGACTCCGCCGTCCTGGTCAAAC 1413446
1413447GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCCAGTTATGTCCACAACTTCTTTGTCTATCTTGTCTATCA 1413523
1413524GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCCAAGGCTAGCCCAAGGGCCTTTCTATTCTTCGTATGCAT 1413600
1413601GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCGACTTCGTCTCTCATGGAAAGCTTATGCTTTCCAACAAACC 1413679
1413680GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAGAGATATTGTCCTGTCCAGCCAGGACGGTGTCGTCCTGGA 1413757
1413758GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAAAACACCATATTGTTTATTTATAAATAAATTAACTC 1413831
1413832GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACATGCCGACACAACCAAAACAAATTCATCGGTGGCAATCTT 1413908
1413909GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACACCTCCTTTTATTTTTGATTTATTCCCGGAAGTTTCCAGAGG 1413987
1413988GTGAGAAAACCTTGCCTGATTAAGAAGGCAAAGGGAC1414024
Left flanking sequence : Till position 1410352 (length bp)
AATAGTAGAGTTTAAAGGGTGCTGTTTGGAGAATTTTCGCTGACCCTTGACCTGAGCTGTCTTCTAAGTT
TCTTAGATAACGCCACTTTTAGAGCCTGCT
Right flanking sequence : From position 1414024 (length bp)
AGGCCCCCTGGCCTGTCCCTTCCAAATTGACGGGCCGGCAGTATGGTAGATGGCTGATGGAGATAGACTG
CTTCGCTTTGCTCGCAGTGACAGAATGGTT
Print the CRISPR sequence : From position bp To position bp