Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_015850_3                                                                                                                 top


Strain : Acidithiobacillus caldus SM-1 RefSeq :NC_015850 (chromosome circular)
CRISPR id : NC_015850_3
DR consensus (28 bp) : GGTTTTCCCCCGCGCACGCGGGGACGACNumber of repetitions :3
Begin Position : 1234131 End Position : 1234281

1234131GGTTTTCCCCCGCACATGCGGGGACAGCCGATTATCCACCAGATGGTCTGCTACCAAATCG 1234191
1234192GGTTCTCCCCCGCGTACGCGGGGACGACCCTATTGGCCCGCGAACCACCGAGCCACTGCAT 1234252
1234253AGTTTTCCCCCGCACACGCGGGGATGAC1234280
Left flanking sequence : Till position 1234131 (length bp)
ATTCGTGGGCGATTGGCCAAACCGGGCCGGGCGGTCTGTCGAGGAAAGGACGAGGGAACCCTGCGGCGGA
AAACGGCCTGAAAGGCCCGTCGCGGGTTCC
Right flanking sequence : From position 1234281 (length bp)
TCCCAAAATCTCCAACAGAGACAACCCCGCAAGGTTCTCCCCCGCACATTGCGGGGACGAAAGCGCAGCA
AATGCGAAATGCGGATTGCAAAAAGTTTCC
Print the CRISPR sequence : From position bp To position bp