Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_016051_3                                                                                                                 top


Strain : Thermococcus sp. AM4 RefSeq :NC_016051 (chromosome circular)
CRISPR id : NC_016051_3
DR consensus (30 bp) : GTTGCAATAAGACTCGAGGAGAATTGAAAGNumber of repetitions :25
Begin Position : 1609161 End Position : 1610814

1609161GTTGCAATAAGACTCGAGGAGAATTGAAAGTCGATATAGAGGGTCACGGCGCTCATCGGGGTTAG 1609225
1609226GTTGCAATAAGACTCGAGGAGAATTGAAAGTGATTCCATCAATCGCGGTTAAATTCGCGGGCATCCA 1609292
1609293GTTGCAATAAGACTCGAGGAGAATTGAAAGTGACGTTGTAGCTCTGCAGGGGCAGAGTGAAGCTCACCCC 1609362
1609363GTTGCAATAAGACTCGAGGAGAATTGAAAGAGACTTCATGGCGGGCACTCAGAAACCACTTGTGCTTA 1609430
1609431GTTGCAATAAGACTCGAGGAGAATTGAAAGGTGTAACCCCGAGGAAGTCCGCTATCCATTCGGTCAAA 1609498
1609499GTTGCAATAAGACTCGAGGAGAATTGAAAGGACAAAGCATATTCGTTGCAAGCGTTGACCTTAAGG 1609564
1609565GTTGCAATAAGACTCGAGGAGAATTGAAAGAACCGTTTCGCTTCCTTCTTGCATGGTTCCCACATCC 1609631
1609632GTTGCAATAAGACTCGAGGAGAATTGAAAGTTTTCAGCAACAACAAAGCAACTAAATCAGATGAAAGTTGCAA 1609704
1609705GTTGCAATAAGACTCGAGGAGAATTGAAAGTATTCTGTGGGCTCGGTAGGGAGTAGGATTATTTTT 1609770
1609771GTTGCAATAAGACTCGAGGAGAATTGAAAGTTCAAAATAGTGGGCAATTTCTGCGGGGATTTTGTCA 1609837
1609838GTTGCAATAAGACTCGAGGAGAATTGAAAGAAGCTCGGCGAGAGCATCTCAATCTCTCTCAGCGCGCC 1609905
1609906GTTGCAATAAGACTCGAGGAGAATTGAAAGGGAACCACCCTCTGCCAATGATTTTATCGTCTTCGT 1609971
1609972GTTGCAATAAGACTCGAGGAGAATTGAAAGCAGATACCGATATATTTGTATGTCTACGACGCAGATAA 1610039
1610040GTTGCAATAAGACTCGAGGAGAATTGAAAGTTTGATAGCTCCGGCGCGCTTCAAATATCTCTCGACGC 1610107
1610108GTTGCAATAAGACTCGAGGAGAATTGAAAGCCAGATGTGTCCCTCGACGTGGGCATCTGGTAGGCCAAGC 1610177
1610178GTTGCAATAAGACTCGAGGAGAATTGAAAGTGAGACTAATCAGGAAAAGCGGGATCAGATAGGCGAAAAG 1610247
1610248GTTGCAATAAGACTCGAGGAGAATTGAAAGTACGGGACATTAGTTACGACAAAAAGAGTTCAGGGAA 1610314
1610315GTTGCAATAAGACTCGAAGAGAATTGAAAGGGGGTTTTTAAACGAAGCGGGAACCTCAGCGGAGATA 1610381
1610382GTTGCAATAAGACTCGAGGAGAATTGAAAGCGAAGACGAAGATGGCGCCCTCTATGCCCTTGAGACCC 1610449
1610450GTTGCAATAAGACTCTAGGAGAATTGAAAGGGGTGATATGACTGTCAGCGTTGAAATGTACCCCTCTT 1610517
1610518GTTGCAATAAGACTCCAGGAGAATTGAAAGACGACTAATCGAAAGCTTTCGATAGTACTCCATTCAC 1610584
1610585GTTGCAATAAGACTCTAGGAGAATTGAAAGTGTCGGGGTCGCTGATCTCTGCGATAATGTAGTTCT 1610650
1610651GTTGCAATAAGACTCTAGGAGAATTGAAAGCGGTAGCTTCTTCCTGGCTCTGATCCCAAGTAACTAC 1610717
1610718GTTGCAATAAGACTCTAGGAGAATTGAAAGTTTTCTCTGTGTATGTAGACCCTCATGTATCCCTCCT 1610784
1610785GTTGCAATAAGACTCTAAGAGAGAAGACCA1610814
Left flanking sequence : Till position 1609161 (length bp)
CGAGTTCCCTCATGATCGTTTCAAGACCGATTTCTAGAAAGGCTTAAATATCGGGGCGTTCTTATTTCTT
CGTTGGGCGAAAGGGCGAATTTCGCGCCCT
Right flanking sequence : From position 1610814 (length bp)
AAATGTCGCAAAATATTTAATCCCAGAGTTCAAAGTGCGTACATGAGCCTCGGAAGGAAAATCAAATCGT
TCGTCGAGGACTTCAAAGTTGTAATCCTGC
Print the CRISPR sequence : From position bp To position bp