Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_016645_9                                                                                                                 top


Strain : Pyrobaculum sp. 1860 RefSeq :NC_016645 (chromosome circular)
CRISPR id : NC_016645_9
DR consensus (25 bp) : CCGGAAATCAAAAGATAGTTGAAACNumber of repetitions :12
Begin Position : 2235098 End Position : 2235868

2235098CCGGAAATCAAAAGATAGTTGAAACCTATTTGGAATTTGGGGGTTTATAAATGTTTCGCCCCTTAC 2235163
2235164CCGGAAATCAAAAGATAGTTGAAACGCCCCGCGGAGGACCTCCGCGAGTCTCCTCAAGACGTGTCTGA 2235231
2235232CCGGAAATCAAAAGATAGTTGAAACCTCCCCTTGGCGTTTTGTATCAGCTCCACGAGCCTCTTCACC 2235298
2235299CCGGAAATCAAAAGATAGTTGAAACCTAGCAACTTTGAACACGTCCATGAGCTTGGCCCACGCAACTG 2235366
2235367CCGGAAATCAAAAGATAGTTGAAACTCCCACCCTTTCCCCCTTCTTCTCGTGGACTGCGTTAAGCTTCT 2235435
2235436CCGGAAATCAAAAGATAGTTGAAACTGATGGTGGTGTAGCTCATATGAGCACCCACACCTCCCTCTGCCT 2235505
2235506CCGGAAATCAAAAGATAGTTGAAACACAAATGTCGGGGTCCGGGGGGGCCTGGGTTTGTCAAG 2235568
2235569CCGGAAATCAAAAGATAGTTGAAACTCTGGGCATGTGCTCCCGTGGCTCCGCGGTTTAAAAATCCGA 2235635
2235636CCGGAAATCAAAAGATAGTTGAAACTACGTAGCCAGGGACCCGTCCTCAAGCTGATCTGTGAACGTGAT 2235704
2235705CCGGAAATCAAAAGATAGTTGAAACTGGATCGGTCTAGAGAACGGTAAAGCTGGCGGTAATATGCTCACA 2235774
2235775CCGGAAATCAAAAGATAGTTGAAACGCGAGGCGGTTCGCAGGCGCGGCGCGGGCGGCGCACTGTGGGGA 2235843
2235844CCAGAAATCAAAAGATAGATGAAAC2235868
Left flanking sequence : Till position 2235098 (length bp)
GCGGAATATATGAATGTAAGGCGCTACCCAAAAGCGTCCACCGAAGAGACAAAAAACAGACGAAAAACTT
AAAAACACACAAAAACCGCAAAAACCAGCC
Right flanking sequence : From position 2235868 (length bp)
TCTACTAATGCCGAGCTGATAGACACACGCCATACATTAATTCACAATTTGGGGATGTGTTTCTACGGTC
ATGGGCAAGCCGGCGCCCGCCCCGCCTCCC
Print the CRISPR sequence : From position bp To position bp