Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_017027_1                                                                                                                 top


Strain : Pasteurella multocida subsp. multocida str. HN06 RefSeq :NC_017027 (chromosome circular)
CRISPR id : NC_017027_1
DR consensus (29 bp) : AGTTCACCATCGTGTAGATGGCTTAGAAANumber of repetitions :7
Begin Position : 341386 End Position : 341774

341386AGTTCACCATCGTGTAGATGGCTTAGAAATCGTTACCTGCGGGCGTTCGAATACAGCGGG 341445
341446AGTTCACCATCGTGTAGATGGCTTAGAAAGTTTAAAGCGCCTGATTTTTATCAATATCCA 341505
341506AGTTCACCATCGTGTAGATGGCTTAGAAATAATGGCGCACCAGTGTCACAAGAGTTCACT 341565
341566TGTTCACCATCGTGTAGATGGCTTAGAAATTTAATTTTTAAAAAAGCGGTCACGCCGGAA 341625
341626GGTTCACCATCGTGTAGATGGCTTAGAAATTCATCGTGGACTGTTCAAAAGAAGTCGAGA 341685
341686AGTTCACCATCGTGTGGATGGCTTAGAAAATATCTGCAAAGTTCGTCACAAAGACTGGAG 341745
341746TGTTCACTATCGTGTAGATAGCTTAAAAA341774
Left flanking sequence : Till position 341386 (length bp)
CGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGTTTTTTTTTCAGATGTTCTTTAACAAATTG
AAATATCCGAAGATATAACAAAATTCATTT
Right flanking sequence : From position 341774 (length bp)
ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTT
TCAAGACCGGTGTATCCAATGCCGTTAAGC
Print the CRISPR sequence : From position bp To position bp