Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_017173_15                                                                                                                 top


Strain : Clostridium difficile CF5 RefSeq :NC_017173 (chromosome circular)
CRISPR id : NC_017173_15
DR consensus (26 bp) : TTTCTTTTACAGCTTCTAAACATATANumber of repetitions :4
Begin Position : 3093172 End Position : 3093396

3093172TTCTTTTTACTGCTTCCATACATATTTTTTCTGTCTGTTCATTTACATAATACAATGCAAAGTCAT 3093237
3093238TCTGTTTTACTGCTTCTATACATATTTCTTCTGTTTGCTCTTTTACACAAGATAGTGCACTGTAGT 3093303
3093304TTTCTTTTACAGCTTCTAAACATATACTATTACTTTGTTCCTTTACATAAGCTAAAGATTTTCCGT 3093369
3093370CTTTTTTTACAGCTTCTAAACATATA3093395
Left flanking sequence : Till position 3093172 (length bp)
GTTTGCTCTTTTACGTACTGTAGTGCTCTTCCATCAATTCTTACTGCTTGCAAACAAATCTCTTCTGTTT
GCTTATTTACATACTGTAGAGCCATATAAC
Right flanking sequence : From position 3093396 (length bp)
CTGGAGTTTGCTCTTTTATTCCTTTTAATATCTCTGCAACATCATTTTTAGATGCCCTTTCTATAAATGC
TAGACATACATCTTCTGTCTGCTCTTCCAC
Print the CRISPR sequence : From position bp To position bp