Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_017177_2                                                                                                                 top


Strain : Clostridium difficile BI1 RefSeq :NC_017177 (chromosome circular)
CRISPR id : NC_017177_2
DR consensus (29 bp) : ATTAAACCTTAACACTACGTGTATTTAAANumber of repetitions :3
Begin Position : 114763 End Position : 114923

114763ATTAAACCTTAACACTATGTGTATTTAAACTTACAATGTTAGTACTTATTACAAGCTTGTTAATCA 114828
114829ATTAAACCTTAACACTTTGTGTATTTAAACTAATCTTTACAATCTTTTAAAATTTCACTTAATTT 114893
114894ATTTAACCTTAACACTATGTATATTTAAA114922
Left flanking sequence : Till position 114763 (length bp)
TTATCATTTTTAATTATTAGCTGGGATAAAAAACTTAGATTAACTAAAATTGCTGTGTTGTAATCATTTC
TTAATTTTGAGAGGTGGCTTATTTACAGAT
Right flanking sequence : From position 114923 (length bp)
TAAATAGGGGGGTATATTTAAATTGATAAATGTTCAATATTCAATTTTTTGTTATTATCCTTCTGTAGAG
TCTAAAGACTCTATAGCTTTAGGGATACTT
Print the CRISPR sequence : From position bp To position bp