Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_017304_3                                                                                                                 top


Strain : Clostridium thermocellum DSM 1313 RefSeq :NC_017304 (chromosome circular)
CRISPR id : NC_017304_3
DR consensus (30 bp) : ATTTCAATTCCTCATAGGTACGATACAAACNumber of repetitions :27
Begin Position : 1914892 End Position : 1916668

1914892ATTCTAATTCTTCATAGGTACGATACACACAGGTCCTGCAGGATATCAGTTAGATACAGATACTTGGGA 1914960
1914961GTTTCAATTCCTCATAGGTACGATACAAACTTCTCCTGCGACTCTCCCAATTTTCAAAAAATCCTC 1915026
1915027ATTTCAATTCCTCATAGGTACGATACAAACCATATTCCAAGTGGATTACCTGCCAGAAAAGAGAGAAA 1915094
1915095ATTTCAATTCCTCATAGGTACGATACAAACTTGTATCCTCCCACTTCTGCAGTTTGGAATACTCTA 1915160
1915161ATTTCAATTCCTCATAGGTACGATACAAACTTTACCGCTTTCATCTTTATATGTTGATGGAATGAAA 1915227
1915228ATTTCAATTCCTCATAGGTACGATACAAACGAGAACACGAAAATAAATGTTTCTTTAATCCTGCTGT 1915294
1915295ATTTCAATTCCTCATAGGTACGATACAAACGCATAGGTTTCCAAGGCAACTATGAGCCCTTCGACCC 1915361
1915362ATTTCAATTCCTCATAGGTACGATACAAACTACTCCGTGAATACCAAGCCAGAGTAAAACACAAA 1915426
1915427ATTTCAATTCCTCATAGGTACGATACAAACGAAGAATGGCTGTGGAATCAATCCAATGAAAAAATAG 1915493
1915494ATTTCAATTCCTCATAGGTACGATACAAACCTGGAACGGTGATTTGAGAAGAGTAGAGATTAACAAAGA 1915562
1915563ATTTCAATTCCTCATAGGTACGATACAAACCACGGAACGGTTTTTTGTGTGGAAAACGGTTTGCGCA 1915629
1915630ATTTCAATTCCTCATAGGTACGATACAAACATTTCCAACATGTCTGCTATTTCTCTGCTGTCAATCG 1915696
1915697ATTTCAATTCCTCATAGGTACGATACAAACCCTTTTGCTTTTTCAAGAGCTGCAATCGCTTTTGCTTT 1915764
1915765ATTTCAATTCCTCATAGGTACGATACAAACTCATTATGAAGTTGACGGAAAGCCATATCTTGCAGT 1915830
1915831ATTTCAATTCCTCATAGGTACGATACAAACCCCTTCGAACATTTCGATTATGCATGTATTAGAACC 1915896
1915897ATTTCAATTTCTCATAGGTACGATACAAACTGGCTTGGTAAGTATAACACAGAGCAAGAAGCTGAAAATA 1915966
1915967ATTTCAATTCCTCATAGGTACGATACAAACTTATTTCACTGATTCCAATGCCAATGTTTTCAAGTT 1916032
1916033ATTTCAATTCCTCATAGGTACGATACAAACGGATTGGAAGCAGCAACCGCTTCAATGGCAGCTTGTTTAA 1916102
1916103ATTTCAATTCCTCATAGGTACGATACAAACCTGTTGCTGGCGCAATTGCAGACCTCGGAAACACCAA 1916169
1916170TTTTCAATTCCTCATAGGTACGATACAAACACAAACATGCTGGGTTTCCCAGTACCTATGAATAGGA 1916236
1916237TTTTCAATTCCTCATAGGTACGATACAAACAAGAGGAGGAAGGTTTCAGATGGGAGCAGTGGCAGGC 1916303
1916304TTTTCAATTCCTCATAGGTACGATACAAACGAAGCTATTGAAGTGCTGAGCAGGAAGGGGGAAGAA 1916369
1916370TTTTCAATTCCTCATAGGTACGATACAAACTCCGGCAGAATGGGATCTTACCGACAGTGCCGGCAA 1916435
1916436ATTTCAATTCCTCATAGGTACGATACAAACCTAGACAGTCACGCGCGATTGCCTGTACAATGTTTTCAA 1916504
1916505ATTTCAATTCCTCATAGGTACGATACAAACGAGCTTCAGGTATATCAGAGATATTGCAGTAATTTA 1916570
1916571ATTTCAATTCCTCATAGGTACGATACAAACCACTTGGTGGCCATCAAAGACCACCAACATTTTTTATC 1916638
1916639ATTTCAATTCCTCATAGGTACGATACAAAC1916668
Left flanking sequence : Till position 1914892 (length bp)
GAAGTGAAATTGCTAAAGGCATCATAGTTATTAAGTCTCATTTTGTTACATCTAGGATAAAAACTGGTTA
TAATAGATTTGATTATATAGATGATACTTA
Right flanking sequence : From position 1916668 (length bp)
AGGGTGATAACATGGCAGAATATTATAAACGGTTTTATGCTATTCGCTCAGTTCTGCATGGTTCTTTAGG
TATAGCACCCGGAGGTCTCGGCTTCCCCGA
Print the CRISPR sequence : From position bp To position bp