Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_017806_1                                                                                                                 top


Strain : Deinococcus gobiensis I-0 RefSeq :NC_017806 (plasmid P5 circular)
CRISPR id : NC_017806_1
DR consensus (29 bp) : CGGTCCATCCCCACGCCTGTGGGGAACGCNumber of repetitions :53
Begin Position : 4428 End Position : 7627

4428GGTCCCATCCCCACGCCTGTGGGGAACGCAAGGGCACTGGGAAGACGATCATCGACAGCAA 4488
4489CGGTCCATCCCCACGCCTGTGGGGAATGCGCCTCCTCGACCATCTGGTAGAAGCGGCAGTC 4549
4550CGGTCCATCCCCACGCCTGTGGGGAACGCCAGCCAGACGAGAACCATTCCCACTAATCCCC 4610
4611CGGTCCAGCCCCACGCCTGTGGGGAACGCTCACGTAGTTTGCGGATGTTGTCAGTCTCCAC 4671
4672CGGTCCAGCCCCACGCCTGTGGGGAACGCTGCATGTTCAGGTTGAGGTTCATGGGATGCTC 4732
4733CGGTCCATCCCCACGCCTGTGGGGAACGCGACCTGGGAATCAGCCCTTTCATGGAGGAGAA 4793
4794CGGTCCATCCCCACGCCTGTGGGGAACGCTTCGTATCAACGGGTCACAACTCTACGCCATT 4854
4855CGGTCCATCCCCACGCCTGTGGGGAACGCCACCACGGCTGCGCCAGATCCTCGCCAGCTCT 4915
4916CGGTCCATCCCCACGCCTGTGGGGAACGCGGCCGGCCGCCGGGCCGCCGCGCCGCCGGAAC 4976
4977CGGTCCATCCCCACGCCTGTGGGGAACGCGGGCCAGTAATGAGGGCATCACCGTTCAGGCC 5037
5038CGGTCCATCCCCACGCCTGTGGGGAACGCCAGCCGACCAAAGTCGCCCCGTCCGAGTTTGC 5098
5099CGGTCCATCCCCACGCCTGTGGGGAACACAGGTGAACGCCGTGTCAGAGGAACAGGGCGGG 5159
5160CGGTCCATCCCCACGCCTGTGGGGAACGCCAGATAGGGCTGATCCCCCTGGAGCAGGGCGT 5220
5221CGGTCCATCCCCACGCCTGTGGGGAACGCGGCGAGCGCGTCCGGCGTGAGGTAGACCGTCA 5281
5282CGGTCCATCCCCACGCCTGTGGGGAACGCAGCAGGGGGTCGGTGAACGTCTCGATGATGTA 5342
5343CGGTCCATCCCCACGCCTGTGGGGAACGCAGGGCCTGGAAGACGCCGAACTGAAGACCGCG 5403
5404CGGTCCATCCCCACGCCTGTGGGGAACGCTCATGCCCAAAGTGGCCCAGGCGAAAGCCAAA 5464
5465CGGTCCATCCCCACGCCTGTGGGGAACGCAAATACTGCTCGATGTCCTGGCGCTTGGGCAT 5525
5526CGGTCCATCCCCACGCCTGTGGGGAACGCGGCTCGGACACGGACGCCGTGCTGGAGAAGAC 5586
5587CGGTCCATCCCCACGCCTGTGGGGAACGCGAATGGGGCGGGCTCAGGGGGAGTCGGTCAGA 5647
5648CGGTCCATCCCCACGCCTGTGGGGAACGCGTGCAACATAACAACGGAAACCCGCGCCCACC 5708
5709CGGTCCATCCCCACGCCTGTGGGGAACGCAAAGAAGGCGAGTTCAAGAGCATCGCGCCGTC 5769
5770CGGTCCATCCCCACGCCTGTGGGGAACGCGACTACGCGCAGGGCCTGGAGGCGCTGGCCAA 5830
5831CGGTCCATCCCCACGCCTGTGGGGAACGCAGCCCCTCAAGCCTAGTCGTGCACGGACAGGG 5891
5892CGGTCCATCCCCACGCCTGTGGGGAACGCCGCAGAACGCCAGCCACGCCCACCGCCTCAC 5951
5952GGGTCCATCCCCACGCCTGTGGGGAACGCCCGATCCAGCCGCGCGCGGCTGGGCTGAGTCC 6012
6013CGGTCCATCCCCACGCCTGTGGGGAACGCGTTAGCCTCGCCGGACAGAATGAACGCGGCGA 6073
6074CGGTCCATCCCCACGCCTGTGGGGAACGCCACATCCCAGAGGTACTCGCCCTCTAGGCAGA 6134
6135CGGTCCATCCCCACGCCTGTGGGGAACGCGGTGTAGCTCGAGATGCCGAGGATCCCGGCCA 6195
6196CGGTCCATCCCCACGCCTGTGGGGAACGCGGTGTAGCTCGAGATGCCGAGGATCCCGGCCA 6256
6257CGGTCCATCCCCACGCCTGTGGGGAACGCGCCATCGGACTGCCCCCCACCTGCGGGGCCGC 6317
6318CGGTCCATCCCCACGCCTGTGGGGAACGCTAGGGCGTCTTGATCCGCAGGCGCCCAATACC 6378
6379CGGTCCATCCCCACGCCTGTGGGGAACGCCTCCCCCATGAGGACGTTGCACAGGTCAAGCA 6439
6440CGGTCCATCCCCACGCCTGTGGGGAACGCGAGTAGGTCGCGTTCCCCGCTCGTGAGCTTGG 6500
6501CGGTCCATCCCCACGCCTGTGGGGAACGCATGGGGTGCGCGGCTGCTGAGTGGGGCTACTG 6561
6562CGGTCCATCCCCACGCCTGTGGGGAACGCGGGTGCATCCAATGGAGCCCAGTACGCTGCCA 6622
6623CGGTCCATCCCCACGCCTGTGGGGAACGCCTGGCCGAAGTTCGCGGCAAGCTGCGAGAGTG 6683
6684CGGTCCATCCCCACGCCTGTGGGGAACGCTGACGGCTACTAAAGGAGGAACCATTATGTCG 6744
6745CGGTCCATCCCCACGCCTGTGGGGAACGCCATGTCGCCGGGGCGTTCCAGAGTGGGGTTGT 6805
6806AGGTCCATCCCCACGCCTGTGGGGAACGCGCCCAGAAATCGCGCGGGGTGGTCCAGTCGTG 6866
6867CGGTCCATCCCCACGCCTGTGGGGAACGCGCCAGCTTCAAGGCAGAGCTGAGGAAGCGCGG 6927
6928CGGTCCATCCCCACGCCTGTGGGGAACGCTGCGGGATGACCGCACCCCATGGGGTGAATTA 6988
6989CGGTCCATCCCCACGCCTGTGGGGAACGCGTTCGGTAGCTCTGGAACTCGGGAGTAATGCA 7049
7050CGGTCCATCCCCACGCCTGTGGGGAACGCGTGGCCTGTTCGTCCTGGCGCTTGATCAGGAC 7110
7111CGGTCCATCCCCACGCCTGTGGGGAACGCGCAACGCTCGAAGAGGCCCAGGCCGCCGCAGA 7171
7172CGGTCCATCCCCACGCCTGTGGGGAACGCGAGCTGGTGCTGCTGCGCGCGCTCGTGCAGGA 7232
7233CGGTCCATCCCCACGCCTGTGGGGAACGCCTCAGCCGAGCGGGCGGGACCCATATCGGCGG 7293
7294CGGTCCATCCCCACGCCTGTGGGGAACGCGGATGGAGGCGGAAGCGTGAGCTGGATTGATG 7354
7355CGGTCCATCCCCACGCCTGTGGGGAACGCCACCTGCACGGCCTGGACCTGGAAGAGCTGCA 7415
7416CGGTCCATCCCCACGCCTGTGGGGAACGCCGTCGCTTCGTCCTCGTCGCCTCTCCCCCTCC 7476
7477CGGTCCATCCCCACGCCTGTGGGGAACGCAATCTGAACGGAGGCCAGCGAGTCCTAAAAGC 7537
7538CGGTCCATCCCCACGCCTGTGGGGAACGCTGGCGGAGCGGGCGGAGCGTCGTCGTCCAGCT 7598
7599CGGTCCATCCCCACGCCTGTGGGGAACGC7627
Left flanking sequence : Till position 4428 (length bp)
AAGGGGCTATTCGGGGTCGCTGCCTAAGCATGTTTGCCCAGAGTCCCCCCATACCTGTGAGGGACGCCAT
GTGCCGCCTGCCCAAGTGCCACCCTGAGCC
Right flanking sequence : From position 7627 (length bp)
ACTTCAGAACTACGCTCTTTTCCTAGCGTCAATCCGCCGTAAGGCGCAGGCCCATAGGCGGATACACATT
ACAATTTGTCATCATCCTCGGGAGGGTCGT
Print the CRISPR sequence : From position bp To position bp