Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_017946_2                                                                                                                 top


Strain : Pyrococcus sp. ST04 RefSeq :NC_017946 (chromosome circular)
CRISPR id : NC_017946_2
DR consensus (30 bp) : GTTCCAATAAGACTAAAAAAGAATTGAAAGNumber of repetitions :21
Begin Position : 154588 End Position : 155980

154588GTTCCAATAAGACTATAAGAGAATTGAAAGCAAGAGGATCCAGAAGCCAGCTGATGAGCGTCTCTGGGTTCCA 154660
154661GTTCCAATAAGACTATAAGAGAATTGAAAGGGGGCTGTTAAAAGGGCTGAAAAAGAGGCTATGGGG 154726
154727GTTCCAATAAGACTATAAGAGAATTGAAAGATTCGCCAGAAAAGCCGAAGAAGAACTCAAAACCTTC 154793
154794GTTCCAATAAGACTATAAGAGAATTGAAAGCTCTTAAACTGACTTATTATCTCAGATTTGGCTCCAG 154860
154861GTTCCAATAAGACTATAAGAGAATTGAAAGTATTTTCAACAAATAAGACATAGAAAGCAAGAGCTTTAT 154929
154930GTTCCAATAAGACTATAAGAGAATTGAAAGGAACTGTGCTGGCTCGGAGAGCTTCTTGCGGCCGGCG 154996
154997GTTCCAATAAGACTATAAGAGAATTGAAAGTGGGCTCGATTTCATCCCATGGGGGCTACTGATAATC 155063
155064GTTCCAATAAGACTATAAGAGAATTGAAAGAGGGCTGTTCGTAGACTACTGGACGGGCCGCCTTTGC 155130
155131GTTCCAATAAGACTATAAGAGAATTGAAAGAACTTCTTACACATTTCATCAAATTCAGCAAATTTTGA 155198
155199GTTCCAATAAGACTAAAAAAGAATTGAAAGGTGGAATCCTATCAATTTTCGTTCGCGGAGGCTCTA 155264
155265GTTCCAATAAGACTAAAAAAGAATTGAAAGTCATAGATAAGGGATTCTCCCTCATGGTATCTTGTCAT 155332
155333GTTCCAATAAGACTAAAAAAGAATTGAAAGCTCTTCCTTACCAGTCTGTCTGTCCTTGTAGACCGCCC 155400
155401GTTCCAATAAGACTAAAAAAAGAATTGAAAGCCAGGTGTTGGAGGAGATGGGGAGGGCTTCTTTAGGG 155468
155469GTTCCAATAAGACTAAAAAAGAATTGAAAGTCAAGTTGCTACCCAAGTCTTGTATCACTCCAAGACC 155535
155536GTTCCAATAAGACTAAAAAAGAATTGAAAGGAGTTACTCTCAGTGTCCTGGACATCCACTGCAATCA 155602
155603GTTCCAATAAGACTATAAGAGAATTGAAAGTCCCACTTGGGTGGACACTTGGAGGCAAAACGGTAAA 155669
155670GTTCCAATAAGACTATAAGAGAATTGAAAGTTGGAACGAACACAGCAACGCTAATCTCAGTGCCCTTACTGACATCACT 155748
155749GTTCCAATAAGACTATAAGAGAATTGAAAGAGGCCCTGAGCCTTACGAACTGCTTGCCATTAACCTC 155815
155816GTTCCAATAAGGCTAAAAAAGAATTGAAAGATACAGACTAATAGCCGACGTGGGCGACGGGCTGTT 155881
155882GTTCCAATAAGACTAAAAAAGAATTGAAAGAACATCGTTCACTCTCACCTTCTTGTTAAACTCCTCGTC 155950
155951GTTCCAATAAGACTATAAGAGAATTGAAAG155980
Left flanking sequence : Till position 154588 (length bp)
AGGCATTCATCCAACTCTAAAAAGCCCCCCTCACAAAAACCTTATAAAAAATCAAGGCAGGAAAATACTA
CAAAAACAAAAAACACCAAAAAAGCCCCCT
Right flanking sequence : From position 155980 (length bp)
TTGAATGTGGTGGGGATCGTGAAAGTCAAATTGTTGATATACGGTGACAAGGACAAGATTAAAATTCTAC
GTGAAAAACTGAAGGGCATCAGTTCAATAA
Print the CRISPR sequence : From position bp To position bp