Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_018092_1                                                                                                                 top


Strain : Pyrococcus furiosus COM1 RefSeq :NC_018092 (chromosome circular)
CRISPR id : NC_018092_1
DR consensus (30 bp) : GTTCCAATAAGACTACAAAAGAATTGAAAGNumber of repetitions :22
Begin Position : 59725 End Position : 61191

59725GTTCCAATAAGACTACAAAAGAATTGAAAGTGTTCATCGCACTTCTTCTTCTGACTCTGCTCCACTTAG 59793
59794GTTCCAATAAGACTACAAAAGAATTGAAAGGCGTTAATGAACAATAAGCCTGACACGAACATAAACA 59860
59861GTTCCAATAAGACTACAAAAGAATTGAAAGTTTCAATAAGGAGTTTCAAATGGCTCGATGGAATTAT 59927
59928GTTCCAATAAGACTACAAAAGAATTGAAAGAGAACCTCCGCAATCTCCTTTGGAGAAAGGCCCTTCTTGAGA 59999
60000GTTCCAATAAGACTACAAAAGAATTGAAAGCTTCTTCGAAGTCGTAGTTTAGTGTGTCAAGATATTCT 60067
60068GTTCCAATAAGACTACAAAAGAATTGAAAGTTCTAGAAGTTCTCTTGCGAGAGCCAAGAGCGCGGCT 60134
60135GTTCCAATAAGACTACAAAAGAATTGAAAGGTGTACTTAAGAATTTCTTTCATAACTTTTCTGAAGA 60201
60202GTTCCAATAAGACTACAAAAGAATTGAAAGACATAAGAGACGGAGAGCTTGTTATCTGGAAAGCAAAT 60269
60270GTTCCAATAAGACTACAAAAGAATTGAAAGAGTTATAACAAACCAGCATGACCCGCTCTCGGCTGAGTGGCAG 60342
60343GTTCCAATAAGACTACAAAAGAATTGAAAGCTACCATGGCCATCACCAATAATTAATTGTAAGTTAG 60409
60410GTTCCAATAAGACTACAAAAGAATTGAAAGATTTGCTGACAAGCCATCGCAAAATTCTTCTGTTTT 60475
60476GTTCCAATAAGACTACAAAAGAATTGAAAGAACTCCACGACAGCATAAGGGACATTTACCATCGTAT 60542
60543GTTCCAATAAGACTACAAAAGAATTGAAAGTTTTTGTGCTGAGCCAACCCACCACTTTGGTAAAACTA 60610
60611GTTCCAATAAGACTACAAAAGAATTGAAAGGGGGCTGCGGGCCGGCTCACACCCCGAGCTCCCGGCTCGGGGTGCTCAT 60689
60690GTTCCAATAAGACTACAAAAGAATTGAAAGTGGGATAATAAAGCCTCTATACTTCTTTGAATAATAG 60756
60757GTTCCAATAAGACTACAAAAGAATTGAAAGTCCAACATGGTTAACTTCCATCCTCTTAAAAGGAACT 60823
60824GTTCCAATAAGACTACAAAAGAATTGAAAGGTAAGGTATTCTTCATAGACACCGCTCTGCATAACGT 60890
60891GTTCCAATAAGACTACAAAAGAATTGAAAGTTGAGGCTGGAGAGGGCTTCTTTGTTACTACTTGCGT 60957
60958GTTCCAATAAGACTACAAAAGAATTGAAAGTTAACTCGTTTAGTTTTATGTTCATGTTCCACACTAA 61024
61025GTTCCAATAAGACTACAAAAGAATTGAAAGCTAATTTACGCTTTAGCTCGTGATCAACCCTAATCCCTA 61093
61094GTTCCAATAAGACTACAAAAGAATTGAAAGACACTCATGTTTTGCTCGTATATGGGACTGACGGTGAA 61161
61162GTTCCAATAAGACTAAAAATAGAATTGTAA61191
Left flanking sequence : Till position 59725 (length bp)
TATAAATAAGGGGTTCTTGGGTAAGGTTGATGTCCCGTAAGGCTTATAAATTCGAGTGATATAGTTACTC
TGTAGGAGTATTGGGGCAAAAAAGCCCCCT
Right flanking sequence : From position 61191 (length bp)
ATAATCTGCGGTGGTGGTGTGTAGGGACAAAAAGACAGAAACTCCTGAATAGGGGTGGGAAAAGGGCATG
AATACCTATCTATATGTCAGGAATGACAAG
Print the CRISPR sequence : From position bp To position bp