Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_022998_1                                                                                                                 top


Strain : Spiroplasma apis B31 RefSeq :NC_022998 (chromosome circular)
CRISPR id : NC_022998_1
DR consensus (36 bp) : GTTTTAGTTATCTGACATATCTAAGGAATAGACGACNumber of repetitions :56
Begin Position : 501849 End Position : 505513

501849GTTTTAGTTATCTGACATATCTAAGGAATAGACGACAATCGCTCTAAATATTCTCAAACAGATCTA 501914
501915GTTTTAGTTATCTGACATATCTAAGGAATAGACGACAAACAACGAGACGTTACATTTTATGATAAA 501980
501981GTTTTAGTTATCTGACATATCTAAGGAATAGACGACCTTTACCAATTAACAATGTATGTGTACCTT 502046
502047GTTTTAGTTATCTGACATATCTAAGGAATAGACGACAGTATCACAAGACGAGTACGACACTCTAGA 502112
502113GTTTTAGTTATCTGACATATCTAAGGAATAGACGACCTATTTTTATAAACAAAGTACCTATCATTA 502178
502179GTTTTAGTTATCTGACATATCTAAGGAATAGACGACATTTTGCCGATAAAGGATTTGCAAGTTGAA 502244
502245GTTTTAGTTATCTGACATATCTAAGGAATAGACGACGAAATGTATTTCAATAGTTATATTATAACA 502310
502311GTTTTAGTTATCTGACATATCTAAGGAATAGACGACATAACTTTAAAAAATATTGACAATTATTAT 502376
502377GTTTTAGTTATCTGACATATCTAAGGAATAGACGACAAACTTAAGATATTTGCTATCGTAACTTTT 502442
502443GTTTTAGTTATCTGACATATCTAAGGAATAGACGACGATAATTACAAAAATAATAAAATGCGCCTT 502508
502509GTTTTAGTTATCTGACATATCTAAGGAATAGACGACATTATTGTAATACTCGCTTGCTTGTACCAA 502574
502575GTTTTAGTTATCTGACATATCTAAGGAATAGACGACCATTTTTATAATGAAAACTTGTCCGTTAGTA 502641
502642GTTTTAGTTATCTGACATATCTAAGGAATAGACGACACCTGTTTTAAAAAAACCAATTGAAGGTGT 502707
502708GTTTTAGTTATCTGACATATCTAAGGAATAGACGACGATTTTGTCATCATAGACATAATCGTTGTA 502773
502774GTTTTAGTTATCTGACATATCTAAGGAATAGACGACTGAAAAGGGAAAAGAAATGTCACGTCCTAT 502839
502840GTTTTAGTTATCTGACATATCTAAGGAATAGACGACTTTTTCAATAACTAATATTTTTATTAGTTG 502905
502906GTTTTAGTTATCTGACATATCTAAGGAATAGACGACAAAAAGGTTATTATTAGCATTCTACAAGCC 502971
502972GTTTTAGTTATCTGACATATCTAAGGAATAGACGACTTTTTTTTCTCGTGTACGATTTCGTTCA 503035
503036GTTTTAGTTATCTGACATATCTAAGGAATAGACGACTTTTTTTTCTCGTGTACGATTTCGTTCA 503099
503100GTTTTAGTTATCTGACATATCTAAGGAATAGACGACATATTCTTGATCGACAAGATTGTTAAAAGT 503165
503166GTTTTAGTTATCTGACATATCTAAGGAATAGACGACCTCAATAGATGTAAACAATGTTTCACAACC 503231
503232GTTTTAGTTATCTGACATATCTAAGGAATAGACGACAAAATATGAATACAATGCAGACGGAAAAG 503296
503297GTTTTAGTTATCTGACATATCTAAGGAATAGACGACTTATCTTTAAACTACTAATTTGTAAACTAG 503362
503363GTTTTAGTTATCTGACATATCTAAGGAATAGACGACTTTTTTTCAATACATAATTACTTGTTCATAA 503429
503430GTTTTAGTTATCTGACATATCTAAGGAATAGACGACGACAACTTCGGAATCATCATTATCAGTAGT 503495
503496GTTTTAGTTATCTGACATATCTAAGGAATAGACGACATCAGTCCGAGAGACTTAAAACAAAGGAGT 503561
503562GTTTTAGTTATCTGACATATCTAAGGAATAGACGACATTAAAATTGAAATTAATAATCATATTTGA 503627
503628GTTTTAGTTATCTGACATATCTAAGGAATAGACGACACGATTTCGTTCAATAAAAAATTCAATCTA 503693
503694GTTTTAGTTATCTGACATATCTAAGGAATAGACGACATCTATTTCATCCGTCACACTTACCACATT 503759
503760GTTTTAGTTATCTGACATATCTAAGGAATAGACGACATGGGAGATCCTGATTGAAAGGGGAGTTTA 503825
503826GTTTTAGTTATCTGACATATCTAAGGAATAGACGACAATAAAGAAATAGTAAAAATTGAAATTATA 503891
503892GTTTTAGTTATCTGACATATCTAAGGAATAGACGACCAAAAACATTGAATTTGAGCATTGGTCTTG 503957
503958GTTTTAGTTATCTGACATATCTAAGGAATAGACGACCAGTATTTAAAACGCAATATTTTTCCCATA 504023
504024GTTTTAGTTATCTGACATATCTAAGGAATAGACGACAAGTTTTTTTCGTCAACCTTCAAGTCTTTC 504089
504090GTTTTAGTTATCTGACATATCTAAGGAATAGACGACTAATAAGTTATATTTCTTAGCTAAAGATGG 504155
504156GTTTTAGTTATCTGACATATCTAAGGAATAGACGACGAACCTATTAAAAATAGTACAACTAATAGA 504221
504222GTTTTAGTTATCTGACATATCTAAGGAATAGACGACTCAATAGTTAGTTTCTCAACGAACTCTTTT 504287
504288GTTTTAGTTATCTGACATATCTAAGGAATAGACGACTTTTTCATTAACTAATATTTTTATTGGTTG 504353
504354GTTTTAGTTATCTGACATATCTAAGGAATAGACGACTCGTAAATTGTTCGTTATAAGTCTTCATTT 504419
504420GTTTTAGTTATCTGACATATCTAAGGAATAGACGACGATTTTATGTACAACGAAATGGAAATTAGT 504485
504486GTTTTAGTTATCTGACATATCTAAGGAATAGACGACTCAACAAAAGTCTTATCATATGGCATTCAA 504551
504552GTTTTAGTTATCTGACATATCTAAGGAATAGACGACCAAAACACAGACCCTACGATCAAGTACAAA 504617
504618GTTTTAGTTATCTGACATATCTAAGGAATAGACGACGTCATTGAAAAACTTTTATTAGAGGTAATT 504683
504684GTTTTAGTTATCTGACATATCTAAGGAATAGACGACGGTTCATAGCTTTTGAACAACCACAACTTT 504749
504750GTTTTAGTTATCTGACATATCTAAGGAATAGACGACACTTGCTGAAGGCTTTGACCAAGGTACGGG 504815
504816GTTTTAGTTATCTGACATATCTAAGGAATAGACGACGTATTGACATACATATTTTTTACCTATAAG 504881
504882GTTTTAGTTATCTGACATATCTAAGGAATAGACGACTTTTTTTCATTTTAAAACCTTTCCATTTCT 504947
504948GTTTTAGTTATCTGACATATCTAAGGAATAGACGACTTTTTCATTAACTAATATTTTTATTGGTCA 505013
505014GTTTTAGTTATCTGACATATCTAAGGAATAGACGACACATTTTCGTTCAATAAAAAATCCAATCTA 505079
505080GTTTTAGTTATCTGACATATCTAAGGAATAGACGACAGTGAAAACAAAGTATCCGCATCTATTTGA 505145
505146GTTTTAGTTATCTGACATATCTAAGGAATAGACGACGGACCAATATATACCTATTTCCCCGACAAC 505211
505212GTTTTAGTTATCTGACATATCTAAGGAATAGACGACGCAATAAGCATTTTTACATCATGTTAGGGGTT 505279
505280GTTTTAGTTATCTGACATATCTAAGGAATAGACGACAACAAGATCAAGTATCTTATACAACCTATA 505345
505346GTTTTAGTTATCTGACATATCTAAGGAATAGACGACTTAGATTTAAATAATTACGAAACAAATAAT 505411
505412GTTTTAGTTATCTGACATATCTAAGGAATAGACGACAAGATTGAGAGTAACAAGGAGTTGGAGATT 505477
505478GTTTTAGTTATCTGACATATCTAATACATAAGGACT505513
Left flanking sequence : Till position 501849 (length bp)
AGAGATATTCGGTACACAAAACTGTTATGACTCATTATCAAATATTTTAAAAGAAATTAAGATAATAACA
ATAGATATTTTAGGTAAAGCATAATTTGAG
Right flanking sequence : From position 505513 (length bp)
AAAAAACCCTACAAAATTACCTTTAAAATTTTACTAATTTTGTTAGGTTATTTGGAAATATAGTTTGAAA
ACTAACATTTTCAAACTATAGTGGTATGGT
Print the CRISPR sequence : From position bp To position bp