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CRISPRs details
NZ_CP006944_1
Flanking alignement tool
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NZ_CP006944_1                                                                                                                 
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Strain :
Mannheimia varigena USDA-ARS-USMARC-1312 GCF_000521695
RefSeq :
NZ_CP006944 (chromosome circular)
CRISPR id :
NZ_CP006944_1
DR consensus (32 bp) :
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC
Number of repetitions :
13
Begin Position :
1239607
End Position :
1240441
1239607
ATTTTAAGTTACAGCTACGCGAAGGTAGCTGC
TTGACAAAATACACTCAACGCCACAGCCATTGAT
1239672
1239673
GTTTCAACTCACAGCTACGCCAAGGTAGCTGC
GCCAAAGAGTGGGCAAAAAAAAGCCCAAAATCAG
1239738
1239739
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC
CTCATTCAAACATTCAGCCAGTTTTAAATCCACGTCGT
1239808
1239809
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC
TGCCGTTAGTTGGTATCGGTTATGAATATACAGCA
1239875
1239876
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC
CTGCGAGAGAGTCGGAAACGTCGCCCCATTAAAAA
1239942
1239943
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC
GAATTTCCACTTCAACCTTTGCAATTTCATTCGG
1240008
1240009
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC
GATATACGCCCGAAAAATCCACATCTCTTGCAAC
1240074
1240075
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC
CTTATCGCAAAAAATGCCCGAAGAAATCAACCCT
1240140
1240141
GTTTCAACTCAAAGCTACGCGAAGGTAGCTGC
TCAATAATTTTTATCAACAACCAAAACTAAAAG
1240205
1240206
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC
GTACGCTCAGAACTTTTAGAGGTGCTCTATCAACTT
1240273
1240274
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC
CTTAACAAATTGGCTAAATGTTTAAATTTAGAATTTA
1240342
1240343
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC
TTAAAGACCGTTTAAATAACGTAATGAAATTAAGC
1240409
1240410
GTTTCAACTCACAGCTACGCGAAGGTAGCTGC
1240441
Left flanking sequence : Till position 1239607 (length
bp)
TCATTTTGAAAATCCTTAGTGATTCATTTCAATGAAGTGTAACATTTTGGATAGAAAAACAAAAATCCTT
GTTTTATTTTAGAAGGGGTAGAAATAGGAA
Right flanking sequence : From position 1240441 (length
bp)
TCCCTATATAAGAAATCATTGTGCTACAAGGCCTATTAGTACCATTTTCGCTAAGCTCTTATACAACGAG
TTGCTCTAGTATAACAGAATCAGAATTATT
Print the CRISPR sequence : From position
bp To position
bp