Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NZ_CP006953_2                                                                                                                 top


Strain : Mannheimia varigena USDA-ARS-USMARC-1388 GCF_000521685 RefSeq :NZ_CP006953 (chromosome circular)
CRISPR id : NZ_CP006953_2
DR consensus (32 bp) : GCAGCTACCTTCGTGTAGCTGTGAGTTGAAACNumber of repetitions :21
Begin Position : 969371 End Position : 970734

969371GCAGCTACCTTCGTGTAGCTGTGAGTTGAAACTAAGACGGAGAAAACCACCAAACAACTTGCCAAAA969437
969438GCAGCTACCTTCGTGTAGCTGTGAGTTGAAACCAAGCCTGATACTTTGCCTTTTACTAGCTGAACAA969504
969505GCAGCTACCTTCGTGTAGCTGTGAGTTGAAACAGACCGCAGGTGATTCGCACCGCTCAGCGTGGTTG969571
969572GCAGCTACCTTCGTGTAGCTGTGAGTTGAAACTTTGCTGTTGGGGATATAGCCACCAAGAGCAGTA969637
969638GCAGCTACCTTCGTGTAGCTGTGAGTTGAAACGTTGATGCCTGTAATACAACATACCCGTTTTAGGG969704
969705GCAGCTACCTTCGTGTAGCTGTGAGTTGAAACGCTGGATAGCGTAAAAGAAAAACTAATCCCTGCT969770
969771GCAGCTACCTTCGTGTAGCTGTGAGTTGAAACGTAGAGTTTGTTATCTGAAATAACTAATAATTGA969836
969837GCAGCTACCTTCGTGTAGCTGTGAGTTGAAACGATTGCCGAAGGGGATAACTACAAGGCAGTGAAAG969903
969904GCAGCTACCTTCGTGTAGCTGTGAGTTGAAACAAAGGTTTTATTCTCAATCGACATTGCTTCTGCTT969970
969971GCAGCTACCTTCGTGTAGCTGTGAGTTGAAACTTAACCCCATTACCTAAAGAGCTAAAAATTTGTGC970037
970038GCAGCTACCTTCGTGTAGCTGTGAGTTGAAACCAATAGAATGGATTTAATGTGGTAAATATCCCCAT970104
970105GCAGCTACCTTCGTGTAGCTGTGAGTTGAAACCTCCACCGTGTCTTTGGCAAAATAACGCAAATTTC970171
970172GCAGCTACCTTCGTGTAGCTGTGAGTTGAAACTGGTGGAATTGTCGGATTATTTTGTGTAGGATTAA970238
970239GCAGCTACCTTCGTGTAGCTGTGAGTTGAAACTTAGCCTCTTCGCCTTTGGCATTTTTTATCCGCT970304
970305GCAGCTACCTTCGTGTAGCTGTGAGTTGAAACGCTATCGGTCATCATTGAGCAGCTCGGCTTATCCA970371
970372GCAGCTACCTTCGTGTAGCTGTGAGTTGAAACATCAAAAGGTCTTTCGGTATGTACTGTTTTTTCC970437
970438GCAGCTACCTTCGTGTAGCTGTGAGTTGAAACTCCTACATCGGCATTGATGCAAACGGCGTAGGTT970503
970504GCAGCTACCTTCGTGTAGCTGTGAGTTGAAACCAGACGTGGCGAAACAAAAATTAATTTGCCCGCAG970570
970571GCAGCTACCTTCGTGTAGCTGTGAGTTGAAACAATTGCGGTGATTGTGCCTTTTTGTTTATGGATT970636
970637GCAGCTACCTTCGTGTAGCTGTGAGTTGAAACCCAACGGACAATATCAAAGAGGTATTGGGGCAGG970702
970703GCAGCTACCTTCGCGTAGCTGCAACTTAAAAT970734
Left flanking sequence : Till position 969371 (length bp)
AATAATTTTGATTCTGTTATACTAGAGCAACTCGTTGTATAAGAGCTTAGCGAAAATGGCACTAATAGGC
CTTGTAGCATAATGATTTCTTATATAGGGA
Right flanking sequence : From position 970734 (length bp)
TTCCTATTTCTACCCCTTCTAAAATAAAACAAGGATTTTTGTTTTTCTATCCAAAATGGTACACTTCATT
GAAATGAATCATTAAGGATTTTCAAAATGA
Print the CRISPR sequence : From position bp To position bp