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CRISPRs details
NZ_CP009961_1
Flanking alignement tool
Page manual
  
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NZ_CP009961_1                                                                                                                 
top
Strain :
Thermofilum sp. 1807-2 GCF_000993805
RefSeq :
NZ_CP009961 (chromosome circular)
CRISPR id :
NZ_CP009961_1
DR consensus (25 bp) :
CTTTCAATTCATTCCTTTCTGATAC
Number of repetitions :
139
Begin Position :
551074
End Position :
559846
551074
ATAGTTATTCCTGCCTTTCTGATAC
CAACCATACACGGTGACACAAAGCTTTACAGATTCAAGCAC
551139
551140
CTTTCAATTCATTCCTTTCTGATAC
ATAAGGGATATAGACTAGGAAACCATATTTTCTTTGTGAA
551204
551205
CTTTCAATTCATTCCTTTCTGATAC
CCGTGTAGTCGCGATTGTTGAACTCGCTCTTATCCTCCT
551268
551269
CTTTCAATTCATTCCTTTCTGATAC
GTTCAGTCTGGCAAAATTTTCTGTTTTCACGACCTCGG
551331
551332
CTTTCAATTCATTCCTTTCTGATAC
ACAACTGTCGAACTATATAGACGCCCCGGAAAACTATAT
551395
551396
CTTTCAATTCATTCCTTTCTGATAC
GTGCTACATCAGGTGCTTCAATCCGCTACTACGTGGAAAC
551460
551461
CTTTCAATTCATTCCTTTCTGATAC
ACGCTACCATTATTATGACGGCTACGCTTATAATGA
551521
551522
CTTTCAATTCATTCCTTTCTGATAC
CTCCGACAACGTGTTGTCGGGAACAGTGCCGGGCGGAC
551584
551585
CTTTCAATTCATTCCTTTCTGATAC
TATACAAACGGCTCGACGCTGCAATCTATTTGTTTGATAC
551649
551650
CTTTCAATTCATTCCTTTCTGATAC
GGGGGCCTTCGTGTTGTTGTTGATGCGTATCGGTTGAA
551712
551713
CTTTCAATTCATTCCTTTCTGATAC
GGTTCTATGCTCCATTCGCTACTCCGATCCCGAG
551771
551772
CTTTCAATTCATTCCTTTCTGATAC
TACTTCTCCCTCCACTCGATGTCAAGCCCCTTATTCTTCCT
551837
551838
CTTTCAATTCATTCCTTTCTGATAC
AAGAGCAACCGAAAAGAGTACGAATTTTGGACAAAGGA
551900
551901
CTTTCAATTCATTCCTTTCTGATAC
AAGCTCCTTACCGGATCCTCCCTAGGATACGAGAAAACG
551964
551965
CTTTCAATTCATTCCTTTCTGATAC
CTAAAGCCTCAAGCCCGTTGACGACCTCTTCACCGCCGA
552028
552029
CTTTCAATTCATTCCTTTCTGATAC
TAGACTTTTCATACAATTCTAACATGCACATGTCACCGC
552092
552093
CTTTCAATTCATTCCTTTCTGATAC
ACTAAGAAACCCATCCGGGTCTTTAATGCCATGAACTCT
552156
552157
CTTTCAATTCATTCCTTTCTGATAC
ACGCCACCTGTGGGGAGCTGTGGCTGCCGCGACCGTGGG
552220
552221
CTTTCAATTCATTCCTTTCTGATAC
ACTTAACGCTTAAACTGTTGTTGAAAACTCGATAGAATAA
552285
552286
CTTTCAATTCATTCCTTTCTGATAC
CTTACCCTTAATCGTAGGTAAGTTTGGAAAACCCATATC
552349
552350
CTTTCAATTCATTCCTTTCTGATAC
TTTAACGCTATATAGTCTTCTAGAGAACATACATAGCTCATG
552416
552417
CTTTCAATTCATTCCTTTCTGATAC
GAGGTCGTAGCTCCACTGAATGTTCCCCAATGTATCTTTT
552481
552482
CTTTCAATTCATTCCTTTCTGATAC
ATGACAGATCTGTAGCCTCCACCCCCCCACGTCTCA
552542
552543
CTTTCAATTCATTCCTTTCTGATAC
GATATATGCAAAAATGTATATAGTATACAAAAAA
552601
552602
CTTTCAATTCATTCTTTTCTGATAC
TTTAACAGGGGCAAAGCCACTGCCCCGCGAACAAATAGA
552665
552666
CTTTCAATTCATTCCTTTCTGATAC
AACGGCTATGAAATTGCAATAACGGTAAACCCAAAT
552726
552727
CTTTCAATTCATTCCTTTCTGATAC
ACGCATCATCAGTGCAATACGAAAATACGTGAATG
552786
552787
CTTTCAATTCATTCCTTTCTGATAC
AAACCCCCACTGTCTCTCTCCTGTTGAGCTACAACTAT
552849
552850
CTTTCAATTCATTCCTTTCTGATAC
AGCTACGGGTAGGGCTCGCGTGGGCTATTGCTATGCAC
552912
552913
CTTTCAATTCATTCCTTTCTGATAC
AACGCTAACGCCTTCAACGTAAACTGTTTGCCTGAC
552973
552974
CTTTCAATTCATTCCTTTCTGATAC
CAATCAGGGTATATCAATGTATACTGGTTGGGGTGAAGA
553037
553038
CTTTCAATTCATTCCTTTCTGATAC
GGTTCACCTACAAATATATCAGTTAACGTTAA
553094
553095
CTTTCAATTCATTCCTTTCTGATAC
ATACCCAAACCGCACTGTATATGTAGCTATAGTTGACCC
553158
553159
CTTTCAATTCATTCCTTTCTGATAC
CTGCGACGTCCCAAAGTGGACTGGAGAAGCGTTATCCG
553221
553222
CTTTCAATTCATTCCTTTCTGATAC
GCATACAATAACCTGATAAAAATGCAAGCGATAG
553280
553281
CTTTCAATTCATTCCTTTCTGATAC
CCAGTTACCCCGGCACTCCTACTCTTCCTCCCCTTCAGCT
553345
553346
CTTTCAATTCATTCCTTTCTGATAC
CTGAGCGGCGAGGCTTCGCTTCAGCCACAGCCGTTCTATG
553410
553411
CTTTCAATTCATTCCTTTCTGATAC
CTCCGACAACGTGTTGTCGGGAACAGTGCCGGGCGGAC
553473
553474
CTTTCAATTCATTCCTTTCTGATAC
TATACAAACGGCTCGACGCTGCAATCTATTTGTTTGATAC
553538
553539
CTTTCAATTCATTCCTTTCTGATAC
GAGGTGACGTGGATGACCGAGCCGGGACGGGTTGTCA
553600
553601
CTTTCAATTCATTCCTTTCTGATAC
AACCCCCACGCTAACAAAATTGCCAGACCGGAATCCCC
553663
553664
CTTTCAATTCATTCCTTTCTGATAC
GAGCAAGAACGTGCACGTGCTACTCTGCGTAGGCTAGCT
553727
553728
CTTTCAATTCATTCCTTTCTGATAC
TGGACGGTCTAGGACGCGTGTGGGGATTCAATAGACGT
553790
553791
CTTTCAATTCATTCCTTTCTGATAC
ATAAGTGTCCGATTTGCGGAAAGGAATACAAAGAGTACAAGATTCTAG
553863
553864
CTTTCAATTCATTCCTTTCTGATAC
TGGTAGCTTTAGCATTAAGAAACAAGAACCAATTACAAGAATTAA
553933
553934
CTTTCAATTCATTCCTTTCTGATAC
TAATCGATTTGACAGGATGCAAGCCGTTATCGCGTG
553994
553995
CTTTCAATTCATTCCTTTCTGATAC
AAGGACAAGATTCCATTGGTGAAATGGGAGGAATAACAG
554058
554059
CTTTCAATTCATTCCTTTCTGATAC
CAAGTACGTATCGCAGCACAAGAAGAAGCGAGACGTCTA
554122
554123
CTTTCAATTCATTCCTTTCTGATAC
TCGTAAATACTGCAAGTCAGCTTGCTGGGAAGCTCAG
554184
554185
CTTTCAATTCATTCCTTTCTGATAC
ATCCAGGCAAGCCTTGAGTTTGCGACAGAGCGAGATTT
554247
554248
CTTTCAATTCATTCCTTTCTGATAC
TGGAAGCTCGTGGATTTCGTAAGCCTAGACCACGGACT
554310
554311
CTTTCAATTCATTCCTTTCTGATAC
ACTTCTAGGGGCTTGACTGTCTCGTGTTCCACAGCTG
554372
554373
CTTTCAATTCATTCCTTTCTGATAC
GCAAACGTGGCGGCAGATTGTGCCGCCAACACTCTCCTGTT
554438
554439
CTTTCAATTCATTCCTTTCTGATAC
CTTTATTTGTAGCTCTGTTTCTGTCATGTTTGTTCA
554499
554500
CTTTCAATTCATTCCTTTCTGATAC
ATTTTCCAAGCTATTTTCTGTATGTTTTTTTGGTTCATCT
554564
554565
CTTTCAATTCATTCCTTTCTGATAC
GAATAGATGTGGCGATGAAGTATTCAGGAAAACGAG
554625
554626
CTTTCAATTCATTCCTTTCTGATAC
TTAGTAATCATGCCCTGTCCTTCATATTTGATTTTTTTA
554689
554690
CTTTCAATTCATTCCTTTCTGATAC
TGCGACGTTGCCATACGTGCTTATGTCCAGGTTTTCCG
554752
554753
CTTTCAATTCATTCCTTTCTGATAC
GCGTCGTGATGTCCTTGATTCAAAAGTTCTTCTCTAATG
554816
554817
CTTTCAATTCATTCCTTTCTGATAC
TTATTAGTGTACGTATAGCTATGAATGTGCCTCCGTATGA
554881
554882
CTTTCAATTCATTCCTTTCTGATAC
AAGGGGTTTTTCTCTAGCCCGGGTTTTTCCTCTATCT
554943
554944
CTTTCAATTCATTCCTTTCTGATAC
TGAGAGTCGGGCAAGCGGGAAAAACCCTGCAGGTGGATT
555007
555008
CTTTCAATTCATTCCTTTCTGATAC
CAGCCGTCGACGCCCAGGCTTCCGTTGCCGGCCGAGCCTA
555072
555073
CTTTCAATTCATTCCTTTCTGATAC
CTGTTGCGGGGCTTCAAGCACCCTGTTGCCTACAACC
555134
555135
CTTTCAATTCATTCCTTTCTGATAC
TTCTTGAAAATGGCGTATCCTCACCGCTTAAATTCCA
555196
555197
CTTTCAATTCATTCCTTTCTGATAC
ACAACCGGCACCTGTGAAGGGGTGATACTAGTCAT
555256
555257
CTTTCAATTCATTCCTTTCTGATAC
ATGTAGATGATGTAGAGTATTAGGCTTAGCGTGACGG
555318
555319
CTTTCAATTCATTCCTTTCTGATAC
AGCGTAAGCATTTCGTTTGAAAACACCATTGTCATAGAC
555382
555383
CTTTCAATTCATTCCTTTCTGATAC
AGGAGGGAGGGCGACTTCGCGTTTTACAAGTATAA
555442
555443
CTTTCAATTCATTCCTTTCTGATAC
TACGTTTGAAGAAACGTCTCGAAAGGCCCGAAGACATCA
555506
555507
CTTTCAATTCATTCCTTTCTGATAC
AAAAAGGTCCCGCGGGACCTAGCGGGACCTAAAGCCAAG
555570
555571
CTTTCAATTCATTCCTTTCTGATAC
GTACTTACAATGGCTTAGGAAATTAAAGTATCT
555628
555629
CTTTCAATTCATTCCTTTCTGATAC
CAACGCCTCCTGCTTGCTCTCTGCTGTGAGGGCCGATG
555691
555692
CTTTCAATTCATTCCTTTCTGATAC
CCCACGACCACACTGTTCAACACCTTCTCAACCG
555750
555751
CTTTCAATTCATTCCTTTCTGATAC
TTATTCGGTTTTTTCTCCGGGCTTGACGTCCTGGTGTGAC
555815
555816
CTTTCAATTCATTCCTTTCTGATAC
TCGGGACTTCAACGAACTCAAAGCACTCCTCTCTCCTCT
555879
555880
CTTTCAATTCATTCCTTTCTGATAC
AGACGTTCTCCGCATTCCTGGAAAGGCTAAGTGTAATTA
555943
555944
CTTTCAATTCATTCCTTTCTGATAC
ATGTCAAGTGGTTCAACGAGCCACGAGTCCCCAGCATGCC
556008
556009
CTTTCAATTCATTCCTTTCTGATAC
CCCACTGGCTAGCTGTGGTGAGGGGTTGCTCGAGTTGCT
556072
556073
CTTTCAATTCATTCCTTTCTGATAC
CCTGGGTAGGGGGTTTTTATGGCGCGTGTCATAGTTGTA
556136
556137
CTTTCAATTCATTCCTTTCTGATAC
ACTATAGGCTGTACGTGCACCAGATTACCTGAGCTGT
556198
556199
CTTTCAATTCATTCCTTTCTGATAC
AGGAGGGTGGGGAGGAGGGGGAGGAATCAAGTGATGAGCG
556263
556264
CTTTCAATTCATTCCTTTCTGATAC
AAGCTTCTTAGTTCTCACATCCACAACTTGGCTAGCCA
556326
556327
CTTTCAATTCATTCCTTTCTGATAC
CGGAGCTATGGGTGAAGATGGCTAGCAGGGATGACGCCCC
556391
556392
CTTTCAATTCATTCCTTTCTGATAC
AGCATTTTTATTGCATTTTTTATTTCTTTTTTCATCT
556453
556454
CTTTCAATTCATTCCTTTCTGATAC
AATAAAAAACGCGGGCTGGCCTTTGGGCATGTA
556511
556512
CTTTCAATTCATTCCTTTCTGATAC
ATATATACCAGGTGGCTACGAGTGGGGTGAACG
556569
556570
CTTTCAATTCATTCCTTTCTGATAC
AGAATCTGTTCAAGTTCCTGTCGTGATTTCACAAATCTCAA
556635
556636
CTTTCAATTCATTCCTTTCTGATAC
TGAAGACCGAGAGGTGACCAGGAGTGGACTTCAG
556694
556695
CTTTCAATTCATTCCTTTCTGATAC
GCATAGAGCGTGTTGCCCGCAGAGTCCAGGAACGTGGC
556757
556758
CTTTCAATTCATTCCTTTCTGATAC
GTACACCACAGCTGTGATTACAACCTCTCTTTCAACTCGT
556822
556823
CTTTCAATTCATTCCTTTCTGATAC
CTTTTTCAGTCACATACACCATTACAGTAATATTGCAGG
556886
556887
CTTTCAATTCATTCCTTTCTGATAC
CCCGCGTCATACCCGAGAAGACGGTTATGTTTGCGGAT
556949
556950
CTTTCAATTCATTCCTTTCTGATAC
CCATACTCGGCCGGCGGCATCCGTTACCTCGCGCTC
557010
557011
CTTTCAATTCATTCCTTTCTGATAC
GTCCGTGACCAGGCTCCCAGGAAGCCACTCGTCCC
557070
557071
CTTTCAATTCATTCCTTTCTGATAC
GTAAGAATGGTATGAACATTACTATTTCGGCCCAGACAT
557134
557135
CTTTCAATTCATTCCTTTCTGATAC
ATATAGCTAAGGGAAAAAACTATATAGCTAGCAAAATCT
557198
557199
CTTTCAATTCATTCCTTTCTGATAC
ATAATCGAGGCTTTCGCAAACCAGGGTCTTGACAGA
557259
557260
CTTTCAATTCATTCCTTTCTGATAC
ACCTACTATACCCTCGTATGACAGTTCTGTCACACCAGTA
557324
557325
CTTTCAATTCATTCCTTTCTGATAC
TAGTATGCTACCTTCTTTTGCGACATCAGTAGGA
557383
557384
CTTTCAATTCATTCCTTTCTGATAC
CGGAGTTTTTCCCGCTTGCCAGACTCCCACTCCCTCAT
557446
557447
CTTTCAATTCATTCCTTTCTGATAC
ACGGGCATTTAAAATCAGGAGTCGGGGGGTCATCCATCC
557510
557511
CTTTCAATTCATTCCTTTCTGATAC
AAGCCCTAACCGCCGTAATAGCTTTATAATTGCTAACAC
557574
557575
CTTTCAATTCATTCCTTTCTGATAC
GTGGTGGTTGTGGTTGTGTGGTTGATACTTGTATATCATA
557639
557640
CTTTCAATTCATTCCTTTCTGATAC
TATAATCAGATGCTTTACGTATTATTACAACTCTTTCA
557702
557703
CTTTCAATTCATTCCTTTCTGATAC
CTCTCAATTCATCTGTGCTCTTGAATTCAATACCGCAAAAT
557768
557769
CTTTCAATTCATTCCTTTCTGATAC
GCCTTTTGTAGGAGCTTGGAAAAAAGCAGTGTAATGAT
557831
557832
CTTTCAATTCATTCCTTTCTGATAC
TCTCGTGTTTTCGACGCGTGCCGGTGTCGGGTTCGG
557892
557893
CTTTCAATTCATTCCTTTCTGATAC
ATGTAAACAGGGACATTGATGCGACATGCTCAGAGCT
557954
557955
CTTTCAATTCATTCCTTTCTGATAC
CGCCGAAGAGCCTGACTGGGAGGATGTATTTAACCACACG
558019
558020
CTTTCAATTCATTCCTTTCTGATAC
CTGTGTTGTGAAACTCGTAAGGAAACCCGTGTCAGTATT
558083
558084
CTTTCAATTCATTCCTTTCTGATAC
ACAGGTGTGCCCAAGGGGATTAGTACCTGTCTAGGGTGTCAC
558150
558151
CTTTCAATTCATTCCTTTCTGATAC
TAGGGCTCCACGGGGCTACGTGTTCAAGAGCGCGACAGG
558214
558215
CTTTCAATTCATTCCTTTCTGATAC
CGCATACTACTCGCTAGCTTCAACGCCTTCTCGGTTAC
558277
558278
CTTTCAATTCATTCCTTTCTGATAC
CCGAGGAAGTTGTCTTCAAAGTCGTCTTCAAGGTAGACTT
558342
558343
CTTTCAATTCATTCCTTTCTGATAC
GGTCGAGTCGGGCCTGGCAGACCGGACACGGCTGATAATAAT
558409
558410
CTTTCAATTCATTCCTTTCTGATAC
TAATTTTATTTTTTGTTCTTGTAGCGTTTCTCTCCTTTA
558473
558474
CTTTCAATTCATTCCTTTCTGATAC
AGGCAATACAGGTCGCGTCGCAAGTGCTGGGACTTGAC
558536
558537
CTTTCAATTCATTCCTTTCTGATAC
AAGGACGCCGTGAACGTCCTCCAGAGCCTTCTATCAGG
558599
558600
CTTTCAATTCATTCCTTTCTGATAC
AGTGTTGAGCCGGGGGGTGACAGAACTGTCACACTTGA
558662
558663
CTTTCAATTCATTCCTTTCTGATAC
AGGGAAGCATTTTCACGGTCATCCCCTCCGGGCTCGGTG
558726
558727
CTTTCAATTCATTCCTTTCTGATAC
TTATATTGTTGTTAGGGTCATATATATCAAGGTTATATGCATA
558794
558795
CTTTCAATTCATTCCTTTCTGATAC
ACCTTAACCTTGTTACTTGACAACTCAAATCACCTTTT
558857
558858
CTTTCAATTCATTCCTTTCTGATAC
GGAGGGAAGGGCTGTCGAGACAATCTACACTTATGCTACTAG
558924
558925
CTTTCAATTCATTCCTTTCTGATAC
ATACGTATTTCCGCCTCGGCTTGGCGAAGTCTGCTTTCCGCAA
558992
558993
CTTTCAATTCATTCCTTTCTGATAC
CCTTGTAAAAATTATGATCACAGCTGTGGAACACG
559052
559053
CTTTCAATTCATTCCTTTCTGATAC
GTAATACCTCATAATGAGTTTATAATGAAACTTCATTAT
559116
559117
CTTTCAATTCATTCCTTTCTGATAC
GTGATGTTTGCAGGAGTCCCTGCACTCGTGGTGGCGG
559178
559179
CTTTCAATTCATTCCTTTCTGATAC
AATAAGAACGTGCACTTCATAGTGCCGTTCCGACGCGAGGG
559244
559245
CTTTCAATTCATTCCTTTCTGATAC
TAGCTAGATGTCAACATTTGAGTGGGATGCTGTCACATC
559308
559309
CTTTCAATTCATTCCTTTCTGATAC
CCAAATCGGCTTTCCGAGACCTTTGCCAGTCAGAATAGT
559372
559373
CTTTCAATTCATTCCTTTCTGATAC
AGAGACTAAGTGAAGCTGTAGGCAAAACATTCCAGTGGA
559436
559437
CTTTCAATTCATTCCTTTCTGATAC
CCACACAGTGCTGTGTTTAAGATTCCTAGCGTTACTGTAC
559501
559502
CTTTCAATTCATTCCTTTCTGATAC
CCAATCCAAAAGCCAATATGTTGAACCCCTAATCTCCTGT
559566
559567
CTTTCAATTCATTCCTTTCTGATAC
CTGGAGGGTGAAACACCGGGAATCACGACAGACCCGT
559628
559629
CTTTCAATTCATTCCTTTCTGATAC
ACACGTGGTGGAGCACGTGGGGTATCATCCAGTTGATGCC
559693
559694
CTTTCAATTCATTCCTTTCTGATAC
GTAACCCTCCGTCGTACTCCTGAACATAGTCACGAACT
559756
559757
CTTTCAATTCATTCCTTTCTGATAC
CCGACGTCGACAGGATTTTCGTGATGAACGATGCTGAATG
559821
559822
CTTTCAATTCATTCCTTTCTGATAC
559846
Left flanking sequence : Till position 551074 (length
bp)
GAAGGATCTAAATCCACTTTACCTCATGAAAGATTTTAATAGCTGCTAGCTTCATTTCATTAAATATTTT
AAAAAGACTACTTCTTTCCTATCTCGCATG
Right flanking sequence : From position 559846 (length
bp)
CGCTTCTTGTTTTTTGTATTGTGGGGGTTGTATTTATTATTTGTTTAAATGTATGTGGTATTTTTTCCAG
GTTTTTTCTATGTTTTTTGATAATGATTCT
Print the CRISPR sequence : From position
bp To position
bp