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CRISPRs details
NZ_CP016502_3
Flanking alignement tool
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NZ_CP016502_3                                                                                                                 
top
Strain :
Ruminiclostridium thermocellum DSM 2360 GCF_001692755
RefSeq :
NZ_CP016502 (chromosome circular)
CRISPR id :
NZ_CP016502_3
DR consensus (30 bp) :
ATTTCAATTCCTCATAGGTACGATACAAAC
Number of repetitions :
27
Begin Position :
1919011
End Position :
1920787
1919011
ATTCTAATTCTTCATAGGTACGATACACAC
AGGTCCTGCAGGATATCAGTTAGATACAGATACTTGGGA
1919079
1919080
GTTTCAATTCCTCATAGGTACGATACAAAC
TTCTCCTGCGACTCTCCCAATTTTCAAAAAATCCTC
1919145
1919146
ATTTCAATTCCTCATAGGTACGATACAAAC
CATATTCCAAGTGGATTACCTGCCAGAAAAGAGAGAAA
1919213
1919214
ATTTCAATTCCTCATAGGTACGATACAAAC
TTGTATCCTCCCACTTCTGCAGTTTGGAATACTCTA
1919279
1919280
ATTTCAATTCCTCATAGGTACGATACAAAC
TTTACCGCTTTCATCTTTATATGTTGATGGAATGAAA
1919346
1919347
ATTTCAATTCCTCATAGGTACGATACAAAC
GAGAACACGAAAATAAATGTTTCTTTAATCCTGCTGT
1919413
1919414
ATTTCAATTCCTCATAGGTACGATACAAAC
GCATAGGTTTCCAAGGCAACTATGAGCCCTTCGACCC
1919480
1919481
ATTTCAATTCCTCATAGGTACGATACAAAC
TACTCCGTGAATACCAAGCCAGAGTAAAACACAAA
1919545
1919546
ATTTCAATTCCTCATAGGTACGATACAAAC
GAAGAATGGCTGTGGAATCAATCCAATGAAAAAATAG
1919612
1919613
ATTTCAATTCCTCATAGGTACGATACAAAC
CTGGAACGGTGATTTGAGAAGAGTAGAGATTAACAAAGA
1919681
1919682
ATTTCAATTCCTCATAGGTACGATACAAAC
CACGGAACGGTTTTTTGTGTGGAAAACGGTTTGCGCA
1919748
1919749
ATTTCAATTCCTCATAGGTACGATACAAAC
ATTTCCAACATGTCTGCTATTTCTCTGCTGTCAATCG
1919815
1919816
ATTTCAATTCCTCATAGGTACGATACAAAC
CCTTTTGCTTTTTCAAGAGCTGCAATCGCTTTTGCTTT
1919883
1919884
ATTTCAATTCCTCATAGGTACGATACAAAC
TCATTATGAAGTTGACGGAAAGCCATATCTTGCAGT
1919949
1919950
ATTTCAATTCCTCATAGGTACGATACAAAC
CCCTTCGAACATTTCGATTATGCATGTATTAGAACC
1920015
1920016
ATTTCAATTTCTCATAGGTACGATACAAAC
TGGCTTGGTAAGTATAACACAGAGCAAGAAGCTGAAAATA
1920085
1920086
ATTTCAATTCCTCATAGGTACGATACAAAC
TTATTTCACTGATTCCAATGCCAATGTTTTCAAGTT
1920151
1920152
ATTTCAATTCCTCATAGGTACGATACAAAC
GGATTGGAAGCAGCAACCGCTTCAATGGCAGCTTGTTTAA
1920221
1920222
ATTTCAATTCCTCATAGGTACGATACAAAC
CTGTTGCTGGCGCAATTGCAGACCTCGGAAACACCAA
1920288
1920289
TTTTCAATTCCTCATAGGTACGATACAAAC
ACAAACATGCTGGGTTTCCCAGTACCTATGAATAGGA
1920355
1920356
TTTTCAATTCCTCATAGGTACGATACAAAC
AAGAGGAGGAAGGTTTCAGATGGGAGCAGTGGCAGGC
1920422
1920423
TTTTCAATTCCTCATAGGTACGATACAAAC
GAAGCTATTGAAGTGCTGAGCAGGAAGGGGGAAGAA
1920488
1920489
TTTTCAATTCCTCATAGGTACGATACAAAC
TCCGGCAGAATGGGATCTTACCGACAGTGCCGGCAA
1920554
1920555
ATTTCAATTCCTCATAGGTACGATACAAAC
CTAGACAGTCACGCGCGATTGCCTGTACAATGTTTTCAA
1920623
1920624
ATTTCAATTCCTCATAGGTACGATACAAAC
GAGCTTCAGGTATATCAGAGATATTGCAGTAATTTA
1920689
1920690
ATTTCAATTCCTCATAGGTACGATACAAAC
CACTTGGTGGCCATCAAAGACCACCAACATTTTTTATC
1920757
1920758
ATTTCAATTCCTCATAGGTACGATACAAAC
1920787
Left flanking sequence : Till position 1919011 (length
bp)
GAAGTGAAATTGCTAAAGGCATCATAGTTATTAAGTCTCATTTTGTTACATCTAGGATAAAAACTGGTTA
TAATAGATTTGATTATATAGATGATACTTA
Right flanking sequence : From position 1920787 (length
bp)
AGGGTGATAACATGGCAGAATATTATAAACGGTTTTATGCTATTCGCTCAGTTCTGCATGGTTCTTTAGG
TATAGCACCCGGAGGTCTCGGCTTCCCCGA
Print the CRISPR sequence : From position
bp To position
bp