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CRISPRs details
NZ_CP017006_1
Flanking alignement tool
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NZ_CP017006_1                                                                                                                 
top
Strain :
Sulfolobus sp. A20 GCF_001719125
RefSeq :
NZ_CP017006 (chromosome circular)
CRISPR id :
NZ_CP017006_1
DR consensus (24 bp) :
GTACTAACGACAAGAAACTAAAAC
Number of repetitions :
90
Begin Position :
67
End Position :
5416
67
GTACTAACGACAAGAAACTAAAAC
TTAGGAGCCACTGTTCCAGAACCACCTGAGCCAGAGG
127
128
GTACTAACGACAAGAAACTAAAAC
TCACAATAAAACACATTTTCCTTACCAGCTACAGT
186
187
GTACTAACGACAAGAAACTAAAAC
GTTATAATAGTTGTTACATCCAAAAAATGAATAAA
245
246
GTACTAACGACAAGAAACTAAAAC
GGAGGAAGTGCTAAGCTGTTGAAGTTCTGGGTCTTCAT
307
308
GTACTAACGACAAGAAACTAAAAC
TTAGTAAAAAATTCTACATTTGATGTAAACATTTTA
367
368
GTACTAACGACAAGAAACTAAAAC
TGCGTAAGATTTCCACCAACTTCATTACCAC
422
423
GTACTAACGACAAGAAACTAAAAC
TTATGTCTTCAACTCCCCTTATTATAGGAGAAAG
480
481
GTACTAACGACAAGAAACTAAAAC
TGCAGACGTCTGTAGTTTTACAGTATAATAATATAGAA
542
543
GTACTAACGACAAGAAACTAAAAC
TTGAACAGTAAGCCTTATCAAACGGCATATCCAGAT
602
603
GTACTAACGACAAGAAACTAAAAC
CTGTAGTTGTTTCCCGTATTGGTAAATAGGAGAAAG
662
663
GTACTAACGACAAGAAACTAAAAC
TCAAACTTCTCGGTGAAGAGGACATGGAATGCAGG
721
722
GTACTAACGACAAGAAACTAAAAC
GTGCCGGTAGTGCCGGTGCCGGTGGTAGTGGTGG
779
780
GTACTAACGACAAGAAACTAAAAC
TTTCCACCATTAAGCGTATATGATGTGCCGTTAAGCGTTA
843
844
GTACTAACGACAAGAAACTAAAAC
CCGAAGTGTAGACAGTCTGAGTAAGATTTCCAC
900
901
GTACTAACGACAAGAAACTAAAAC
CCCTGAGTTCAGTTTGAGTCTGGTTTGGTAAGGTAG
960
961
GTACTAACGACAAGAAACTAAAAC
ATATGGCTATTTTTAGAGCTACAATTTCAACTGTTT
1020
1021
GTACTAACGACAAGAAACTAAAAC
ATTTTCGAAATGCCTTAAGCCCTAACTCGATTTC
1078
1079
GTACTAACGACAAGAAACTAAAAC
AGAAATTTTAATGTGGGGGGGTGTATTTACCGCGAG
1138
1139
GTACTAACGACAAGAAACTAAAAC
GAAAATCCCGAGAATTTTGATCCGCTTTTAGACTTT
1198
1199
GTACTAACGACAAGAAACTAAAAC
TACAGGCTAGCATGCCCAATCATCTACCTTCAGG
1256
1257
GTACTAACGACAAGAAACTAAAAC
TAGCTCCAATTTGGTAATTCTACAGACCAGTTGAA
1315
1316
GTACTAACGACAAGAAACTAAAAC
AGAGATCGACAAAGACATTAGGGAACCTAATGAA
1373
1374
GTACTAACGACAAGAAACTAAAAC
ATAAAAATTTCCACAAGAGAAAGCTGAAAAAAGA
1431
1432
GTACTAACGACAAGAAACTAAAAC
AATAACTCTGGTACTGGTATCAGTAATTCTAATCCATAT
1494
1495
GTACTAACGACAAGAAACTAAAAC
TTACATGGTATTGGGTAGGTACAGTTTGGGACAGAG
1554
1555
GTACTAACGACAAGAAACTAAAAC
AATCTTGTTTCCATTAACGCGAGAGCTTCCTCTTTT
1614
1615
GTACTAACGACAAGAAACTAAAAC
TGTACATAGAGAGATGGGGCGATTTTGTTAGAAGC
1673
1674
GTACTAACGACAAGAAACTAAAAC
CTAGTAACCTTCTGGTATTCATATAATAATGGAATATC
1735
1736
GTACTAACGACAAGAAACTAAAAC
TATCTACAAATCGTGTTGTTTAACGATCTCAAAAG
1794
1795
GTACTAACGACAAGAAACTAAAAC
AATCCAAATGATATTATTCAGATGAAATTAATTGT
1853
1854
GTACTAACGACAAGAAACTAAAAC
ATAAACGTAATTGAATGGGACGGCGTATCGGACAT
1912
1913
GTACTAACGACAAGAAACTAAAAC
GCATCAGAAAGGACTTCTGGTTTAGTGGGATATTATGT
1974
1975
GTACTAACGACAAGAAACTAAAAC
CCGACACTGTATCGCTCTCCGTGGACTGACCCACA
2033
2034
GTACTAACGACAAGAAACTAAAAC
GTTAACCCGTTAGATACTAGTGGAAACATTAAGGT
2092
2093
GTACTAACGACAAGAAACTAAAAC
TGGTCGCTACCCGCATAGACCTTCCAGGCAGCC
2149
2150
GTACTAACGACAAGAAACTAAAAC
ATGAAAGATGTTACCATGTGGGATAATCATACCT
2207
2208
GTACTAACGACAAGAAACTAAAAC
ATCTCTAGTTTCCAAAGTAATAAAGGGGTTATCAGA
2267
2268
GTACTAACGACAAGAAACTAAAAC
ATGAGAGATGGAAGATTGATGATAATTCCAATAAAA
2327
2328
GTACTAACGACAAGAAACTAAAAC
AATACTCATATGATTAAGATAACCGGGGTGGTATATA
2388
2389
GTACTAACGACAAGAAACTAAAAC
TCCATCCCCTAAATTCTGCGTTTTGTTTCTTTACTT
2448
2449
GTACTAACGACAAGAAACTAAAAC
AAAATGAATCTATCAATAATATATGGTTTTCTCCAAT
2509
2510
GTACTAACGACAAGAAACTAAAAC
TCGCCAAGCATCGATGGTTACGTCGTATTTTACAAG
2569
2570
GTACTAACGACAAGAAACTAAAAC
AATTAGTGCGGTAGATTTAAGGGTTAACGTATTGCA
2629
2630
GTACTAACGACAAGAAACTAAAAC
AACACAACCACATTGAACTATAACTATACAAAAC
2687
2688
GTACTAACGACAAGAAACTAAAAC
TCTTTTTCATTATTTTTGCTCTGGTATAGACGTCTT
2747
2748
GTACTAACGACAAGAAACTAAAAC
TAAGACTTATCACGCCAGTAACAAATATCCGCTTAT
2807
2808
GTACTAACGACAAGAAACTAAAAC
CCTTATTTACCCAGTAAACATAGAGTCCACTAA
2864
2865
GTACTAACGACAAGAAACTAAAAC
GAGTATCTAAGGGGGGTCAAGATAGGATATATTAA
2923
2924
GTACTAACGACAAGAAACTAAAAC
TCACGATGAGAACCGAGGGAAAAAAGGCATATT
2980
2981
GTACTAACGACAAGAAACTAAAAC
TATTTCTGAAATCACTGGCAACTACATCAGCGAA
3038
3039
GTACTAACGACAAGAAACTAAAAC
TTTATGTTTTTGAACCTCCGGATCATCAAAATCGATAATCTT
3104
3105
GTACTAACGACAAGAAACTAAAAC
GCCATTGAGTCAAGTTAGAGACATAGTTGCTACAA
3163
3164
GTACTAACGACAAGAAACTAAAAC
ATGTGAAAAAAGGGAGACAGCGAAAAAGATAATAG
3222
3223
GTACTAACGACAAGAAACTAAAAC
TGGCTTAGGGACTTAATATATCCATGTGGTTCCGTTCCAAAT
3288
3289
GTACTAACGACAAGAAACTAAAAC
CTCTCATCTCAGCAAATAATGCCACTTTCAACAGGGT
3349
3350
GTACTAACGACAAGAAACTAAAAC
CTAACACCCCCACCACCAAAAAACCCCGGTAAGG
3407
3408
GTACTAACGACAAGAAACTAAAAC
ATCGAGAGGAATAAGCGGATATTTGTTACTGGCGTGATAT
3471
3472
GTACTAACGACAAGAAACTAAAAC
TCCATGGGTTGTCCTAGCATTTCGTAATCCTCA
3528
3529
GTACTAACGACAAGAAACTAAAAC
ACACTACACAATAGATATCGCTGATCGTGAAATGCT
3588
3589
GTACTAACGACAAGAAACTAAAAC
TAGTTGCTGCTCTAATTTCTTAAGCCTTAGTTT
3645
3646
GTACTAACGACAAGAAACTAAAAC
TTCTGGATCGCTTGGACTGCTGTGGTAGTAGTCTGT
3705
3706
GTACTAACGACAAGAAACTAAAAC
ATTGCTTGCCAGATCGTTGAGCAAAGGTGATGATGT
3765
3766
GTACTAACGACAAGAAACTAAAAC
TAGCGCATATTCCAGTTGCTTGTAGATTCCTAAATC
3825
3826
GTACTAACGACAAGAAACTAAAAC
GCCAATTCTCTGTTGGTAGCATCTCCTAGTGTAAAGTT
3887
3888
GTACTAACGACAAGAAACTAAAAC
AGTGGAATCCAGGCTACAACCAATATATTAGTGTA
3946
3947
GTACTAACGACAAGAAACTAAAAC
ACTTGGACTGATGCAGTACCCCCAGTAATCGCCTCATA
4008
4009
GTACTAACGACAAGAAACTAAAAC
CTAAATCCAAACATCTCTGAAAGCTTATCGGTAAA
4067
4068
GTACTAACGACAAGAAACTAAAAC
TAAAAACGACACGATGGTAGTGCAAACGGTTGAGA
4126
4127
GTACTAACGACAAGAAACTAAAAC
ATAATGAGGGCTGGCGCTGCGCGGTTTGAACTGAAGG
4187
4188
GTACTAACGACAAGAAACTAAAAC
GCTCCTAGGGACTATTGGAGGGGCATTTATCTTAAGC
4248
4249
GTACTAACGACAAGAAACTAAAAC
GAGGAGGGTAGGTTTGTGGGATGGCGATATCTTA
4306
4307
GTACTAACGACAAGAAACTAAAAC
TTGTTCTCCCCATCTGACACTGTACCTTTCAGAA
4364
4365
GTACTAACGACAAGAAACTAAAAC
CAAAATCCTAATTCTTTTCAAATTCCAGCTGGTA
4422
4423
GTACTAACGACAAGAAACTAAAAC
ACCTTAATATTATTAGTTTGGTAAATGATCTCTT
4480
4481
GTACTAACGACAAGAAACTAAAAC
TGGCTTTTCCAATACCCCCACAACAACAATATCATC
4540
4541
GTACTAACGACAAGAAACTAAAAC
ACGAGTATGTCTGCATAAAAACAAAACAAAGGTATTTT
4602
4603
GTACTAACGACAAGAAACTAAAAC
ATTACTCACAATTGGTGTAGTTATAATTATCCTATT
4662
4663
GTACTAACGACAAGAAACTAAAAC
TGTTTTAATTTAGGATTTATTGGTGAATATGCAATT
4722
4723
GTACTAACGACAAGAAACTAAAAC
TTTCAACGTATTTGTATCCAAAATCTTGTTGACGA
4781
4782
GTACTAACGACAAGAAACTAAAAC
ATGAAAATGAGATACGCCGTCTTAGATCAAAACAAT
4841
4842
GTACTAACGACAAGAAACTAAAAC
ATTAGCCGTAAAGCATTTACAAGGACAAACACAAT
4900
4901
GTACTAACGACAAGAAACTAAAAC
TGGTAACCCAACTTATGAAATTGCCCCCATACCAATT
4961
4962
GTACTAACGACAAGAAACTAAAAC
GCAAGCTGCCGGAGTACCAGGTTGTCTCCAGGCTAGGCTTGTA
5028
5029
GTACTAACGACAAGAAACTAAAAC
GTGGTTACAGCAGCTTTCCCAGTGTTATCTTGTACCAATATATT
5096
5097
GTACTAACGACAAGAAACTAAAAC
ATTTCAGGGTTCTCTCCTAGCTCGATCCACGCTTT
5155
5156
GTACTAACGACAAGAAACTAAAAC
ATAGCAGAAGGTGGTATGTTAAACATAGTAGCAGC
5214
5215
GTACTAACGACAAGAAACTAAAAC
TACTTGCCGTTAAGCCTGAAAACACTGCCATTGATT
5274
5275
GTACTAACGACAAGAAACTAAAAC
TTTGACGCTCCTGCAGGACTTCGATTCGAGATAGT
5333
5334
GTACTAACGACAAGAAACTAAAAC
ACATAAATCTGGGGGGCTACTGATTTTCATGGCTT
5392
5393
GTACTAACGACAAGAAACTAAAAC
5416
Left flanking sequence : Till position 67 (length
bp)
GTAAATGCTAAAATACTAACGAAACTAAAACCCGGAGTTCTCGCGGTAAAGAGTCCTCCCACATTA
Right flanking sequence : From position 5416 (length
bp)
TTGTAGGGAACAAGATGTTGAGTTTGCCGAAGAGATTGTACTAACGACGAGTGTGTGGACAACAATTTCA
TCCACCCCCCTTAAAATTCAATTTTATTCC
Print the CRISPR sequence : From position
bp To position
bp