Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NZ_CP018888_1                                                                                                                 top


Strain : Lactobacillus amylophilus DSM 20533 = JCM 1125 GCF_001936335 RefSeq :NZ_CP018888 (chromosome circular)
CRISPR id : NZ_CP018888_1
DR consensus (28 bp) : GTTTTCCCCGCACAGGCGGGGGTGATCCNumber of repetitions :53
Begin Position : 1015304 End Position : 1018503

1015304GTTTTCCCCGCACAGGCGGGGGTGATCCTATTGCAAAGACCGCTACTGAAGCGCGGCCGGT1015364
1015365GTTTTCCCCGCACAGGCGGGGGTGATCCTGTTGTAAAAGCTAACGCCGTTAATAGGTTAGA1015425
1015426GTTTTCCCCGCACAGGCGGGGGTGATCCCGGCGCCGGCTACTATGTATACTTTGAACCGTT1015486
1015487GTTTTCCCCGCACAGGCGGGGGTGATCCCGGTAGACCAAGTTATTATTTTGGTGAAAAAGG1015547
1015548GTTTTCCCCGCACAGGCGGGGGTGATCCCGCGGTAGGCCGTGCTAGGTATGACAACGGCGC1015608
1015609GTTTTCCCCGCACAGGCGGGGGTGATCCTCTCATAGTGCCCGTTTTTCTTATATATTGCTT1015669
1015670GTTTTCCCCGCACAGGCGGGGGTGATCCTCTCCACCACTCGCTTAAACTTCGTCTCATCAC1015730
1015731GTTTTCCCCGCACAGGCGGGGGTGATCCCACTAAAAGCAGTCCCGGTACCATAAGATATTG1015791
1015792GTTTTCCCCGCACAGGCGGGGGTGATCCTTGTATTATATAAATATAGAAGAGAGCAGGAGA1015852
1015853GTTTTCCCCGCACAGGCGGGGGTGATCCCCATTCCTCCAAAACGAAAAATGGTCGGAGTTC1015913
1015914GTTTTCCCCGCACAGGCGGGGGTGATCCTACATGGTTTTCACAAACTCATACATTGTTCTC1015974
1015975GTTTTCCCCGCACAGGCGGGGGTGATCCTATGTTACGCCATCATCAATATCATCAGGGAAC1016035
1016036GTTTTCCCCGCACAGGCGGGGGTGATCCTAGTAAGGGCATCGTCAGAGCTCGCAAAGATGG1016096
1016097GTTTTCCCCGCACAGGCGGGGGTGATCCTCTTTTTAGCCAATTGCACTTGCGTAATGCGTT1016157
1016158GTTTTCCCCGCACAGGCGGGGGTGATCCTCAACATTAACCTTAATCTTTGTCATTTAAAGC1016218
1016219GTTTTCCCCGCACAGGCGGGGGTGATCCCACTCAGGAGTACCTAATAAAACAGATTAGTCC1016279
1016280GTTTTCCCCGCACAGGCGGGGGTGATCCTTATCCACGGGCGTTGCGTTGTCATCAGGATTA1016340
1016341GTTTTCCCCGCACAGGCGGGGGTGATCCCAGGCTTGTTATTTAAGGGGGTTGGTTGGCTAT1016401
1016402GTTTTCCCCGCACAGGCGGGGGTGATCCTACTGATTTGTCTTGTGGCGTTATCAGCGTTGC1016462
1016463GTTTTCCCCGCACAGGCGGGGGTGATCCTTTATCAAAGAGGTACCCACAAAGAGAGGATGA1016523
1016524GTTTTCCCCGCACAGGCGGGGGTGATCCTTAAAAAGGCAAACCTCAATCTGGAGGTTAAAA1016584
1016585GTTTTCCCCGCACAGGCGGGGGTGATCCTAATTTCTGTCAAACAATTTATATTAGTTGTTG1016645
1016646GTTTTCCCCGCACAGGCGGGGGTGATCCTTCATGAGGGTGTAGACCGTTCGACAGTCAATG1016706
1016707GTTTTCCCCGCACAGGCGGGGGTGATCCTCATTTCATCTTGGCAGGCTCTGCAGGCTTGAT1016767
1016768GTTTTCCCCGCACAGGCGGGGGTGATCCTTGTCTTCCCCCCTTGGCGTAATTTTGAAGTTT1016828
1016829GTTTTCCCCGCACAGGCGGGGGTGATCCTGCCGCATCGACATCTACCTTGTTTTGCGTAAT1016889
1016890GTTTTCCCCGCACAGGCGGGGGTGATCCCACTAGTGGTTCTTGTAATGGTAGCTTGACCGA1016950
1016951GTTTTCCCCGCACAGGCGGGGGTGATCCTAAATAATTTCCTCTACTCTATCAGACGTCTGT1017011
1017012GTTTTCCCCGCACAGGCGGGGGTGATCCCCATCGCTTCCTATTATACTTTTAACACCATCG1017072
1017073GTTTTCCCCGCACAGGCGGGGGTGATCCTGATACATTGAACCCGTCTGATTTAATGAAACA1017133
1017134GTTTTCCCCGCACAGGCGGGGGTGATCCCATGGTCGTTTTAACGGCGGACGCCGTTATCGA1017194
1017195GTTTTCCCCGCACAGGCGGGGGTGATCCTAATTCCTTTAAATCGTTATAGCCCGTGTAGTC1017255
1017256GTTTTCCCCGCACAGGCGGGGGTGATCCTTGCTAATCCATGGCATATCAATACCGACAATT1017316
1017317GTTTTCCCCGCACAGGCGGGGGTGATCCCTAGTATCTAAACCATAGTAGTTTAGTGTTTTC1017377
1017378GTTTTCCCCGCACAGGCGGGGGTGATCCTAGATATTGTAAGAGAGATAGAGAGAGGGAGAA1017438
1017439GTTTTCCCCGCACAGGCGGGGGTGATCCCGTAGCTTAAAACCTGCTGAATAGTGCCAGACC1017499
1017500GTTTTCCCCGCACAGGCGGGGGTGATCCTCAAGTTAAAAGCTGATGGTTCAAAGGTGGATA1017560
1017561GTTTTCCCCGCACAGGCGGGGGTGATCCTCCGCGCAATGATTTAACAGGTGCAGAGGTTAA1017621
1017622GTTTTCCCCGCACAGGCGGGGGTGATCCTCATACGGGCCGGCGTGTGTGTAGTCGCGCGGG1017682
1017683GTTTTCCCCGCACAGGCGGGGGTGATCCTCATGATAATTCAAAAGTTTTTGAAATGTTTAC1017743
1017744GTTTTCCCCGCACAGGCGGGGGTGATCCCTCCAACTAAAAATTGGATTATCGGAGTTAAAA1017804
1017805GTTTTCCCCGCACAGGCGGGGGTGATCCTCAGGGGTCTAGCAGCAAAGCCACGGCTCAGTA1017865
1017866GTTTTCCCCGCACAGGCGGGGGTGATCCTCGCCAGAGCATTTCTAATTTTCGTGTTGGCAG1017926
1017927GTTTTCCCCGCACAGGCGGGGGTGATCCCAGCAAGCAAGGCTATTATCGACTATGCGTTTA1017987
1017988GTTTTCCCCGCACAGGCGGGGGTGATCCTTACAACCGCTTTTACGGCATTTATGCATAATC1018048
1018049GTTTTCCCCGCACAGGCGGGGGTGATCCTAAGTGTTCGATAAATTTACCTAGATTTTCAAA1018109
1018110GTTTTCCCCGCACAGGCGGGGGTGATCCTTGTGCTAGGCTGGTTGCAGATATTTGTAAGCG1018170
1018171GTTTTCCCCGCACAGGCGGGGGTGATCCTACCGCCCACTTGATGATGTGATATGCCTTGTC1018231
1018232GTTTTCCCCGCACAGGCGGGGGTGATCCTCCACTCAACACCACCAATTCTGCCTTGCACGA1018292
1018293GTTTTCCCCGCACAGGCGGGGGTGATCCTATTCATTATCTTGCCATGTGTAATATGCATCA1018353
1018354GTTTTCCCCGCACAGGCGGGGGTGATCCTAGCACAGTATAAATAATTAGGAGGTCATTCAA1018414
1018415GTTTTCCCCGCACAGGCGGGGGTGACTGATCAAGTTGAGTGATAAATTTGCGGTTTTCAAT1018475
1018476GTTTTCCCCGTACAGGCGGGGGTGATCC1018503
Left flanking sequence : Till position 1015304 (length bp)
GCGGAATCAGATGCGCTGGCAACGGCAAAGCTTGCGGATCAACTCATAAAAAATAGTTTACTATATTTTT
AGAATGTTGATTTATAAGGGATCTTTTAGT
Right flanking sequence : From position 1018503 (length bp)
TTGGTGCCGGAATATTTCAAATCTGATTTTTTAGTTCCCTGTATATACGGGGTGATTCATACACCGATAG
CTTATATCAGTCAGCAATTACAACTTATGA
Print the CRISPR sequence : From position bp To position bp