Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NZ_LN999010_1                                                                                                                 top


Strain : Thermococcus chitonophagus 1 GCF_900012635 RefSeq :NZ_LN999010 (chromosome circular)
CRISPR id : NZ_LN999010_1
DR consensus (30 bp) : CTTTCAATTCTCTTCTAGTCTTATTGGAACNumber of repetitions :12
Begin Position : 144344 End Position : 145113

144344CTTTCAATTCTCTTCTAGTCATATTGGAACGTTTAATGCGAGGTATGCTAAATTATCGAGATATCAA144410
144411CTTTCAATTCTCTTCTAGTCTTATTGGAACAAGCAGTAGGGGCAGCGATACTTACCCCAAGCCGTCATTT144480
144481CTTTCAATTCTCTTCTAGTCTTATTGGAACTTCAAACCTCCGATCGACGTTAAAGCATTCGTTGAGAA144548
144549CTTTCAATTCTCTTCTAGTCTTATTGGAACATGGTGAACGACGACAGGGCGTTCAAGGCAGGCTACCGT144617
144618CTTTCAATTCTCTTCTAGTCTTATTGGAACCAAACTTTGTTAATACCCTGAAGAACAACTTCTTAGG144684
144685CTTTCAATTCTCTTCTAGTCTTATTGGAACTTGGGGACTGCAGCAGGAGCTGGATGTTTTGCCA144748
144749CTTTCAATTCTCTTCTAGTCTTATTGGAACTGAGATGGGAAATGTTGACGTGTCGATTATAGAAGT144814
144815CTTTCAATTCTCTTCTAGTCTTATTGGAACGTGCTCGCCGCAATAATAGCCGTCGCCGCAGTCTCGT144881
144882CTTTCAATTCTCTTCTAGTCTTATTGGAACAGCGTAAGGGTGGAGGTCTGGCTGAACAACACGAAACT144949
144950CTTTCAATTCTCTTCTAGTCTTATTGGAACTGGCGCCCGGCCGAGCTGGGCCCGTCCGGAATGAAGCT145017
145018CTTTCAATTCTCTTCTAGTCTTATTGGAACAAAGATAACTTTTGCCCTAACCTTCTCGGGGTCAAA145083
145084CTTTCAATTCTCTTCTAGTCTTATTGGAAC145113
Left flanking sequence : Till position 144344 (length bp)
AAGGACTATGGATGGACGAGATAATCACGTGAGGTACGAGCTCCCAAAGGATAAACTAGTGGAGATAATG
AAGAAGTACGGCAGGATTTAATACCCCTTT
Right flanking sequence : From position 145113 (length bp)
AGGCGCGATTTTTCGTGCAATTCTCCCAATATCCTCTAAAAAAGCTCCGATATTATAAGCCTTTCGATGA
CGGGCCACATTATACCTGCCAATAACGCGG
Print the CRISPR sequence : From position bp To position bp