CRISPRtionary : Example

This example is based on Y. pestis sample data ( see related paper ):

• The txt file Sample1 contains sequences of Y. pestis public strains related to YP1 CRISPR.
• The Dictionary1 file contains a list of Y. pestis published spacers.

To compare the dictionary spacers to the sequences spacers, press FindCRISPR button.

Using published data( see paper )
Y. pestis sample dictionary (Dictionary1)
Y.pestis sequences sample file (Sample1) >Yersinia_pestis_CO92 TTTGATTATTGCCTGTGCGGCAGTGAACTCAGGGGACTGGCGAACAATGTCTTTCATGATTTTCTAAGCT GCCTGTGCGGCAGTGAACGAAAAGGTAAGATGGGCAAGCTTCTAGTAGTTTTTCTAAGCTGCCTGTGCAG CAGTGAACATTATCTGAATGGCATTTTCTTTGGCGCAGATTTTCTAAGCTGCCTGTGCGGCAGTGAACTC GCCATTCCGTGAACCTGAGCGCGTTCGCGATTTCTAAGCTGCCTGTGCGGCAGTGAACATATTCTCGAGC GATAGCAATAGCCATTCCACTTTCTAAGCTGCCTGTGCGGCAGTGAACTCGGTCAAACAAATTTAGGCGA CGATTTAACATTTCTAAGCTGCCTGTGCGGCAGTGAACAAAAAGAATTTGGGATTAAAGTTACCCATCAG TTTCTAAGCTGCCTGTGCGGCAGTGAACTCAATGCCTGAATCTCTGGCGTGATAGCTGCGGTTTCTAAGC TGCCTGTGCGGCAGTGAAC >Yersinia_pestis_KIM GTTCACTGCCGCACAGGCAGCTTAGAAAATCTGCGCCAAAGAAAATGCCATTCAGATAATGTTCACTGCT GCACAGGCAGCTTAGAAAAACTACTAGAAGCTTGCCCATCTTACCTTTTCGTTCACTGCCGCACAGGCAG CTTAGAAAATCATGAAAGACATTGTTCGCCAGTCCCCTGAGTTCACTGCCGCACAGGCAATAATCAAA >Yersinia_pestis_Antiqua TTTGATTATTGCCTGTGCGGCAGTGAACTCAGGGGACTGGCGAACAATGTCTTTCATGATTTTCTAAGCT GCCTGTGCGGCAGTGAACGAAAAGGTAAGATGGGCAAGCTTCTAGTAGTTTTTCTAAGCTGCCTGTGCAG CAGTGAACATTATCTGAATGGCATTTTCTTTGGCGCAGATTTTCTAAGCTGCCTGTGCGGCAGTGAACTC GCCATTCCGTGAACCTGAGCGCGTTCGCGATTTCTAAGCTGCCTGTGCGGCAGTGAACACATCACTAGCG GTATCGAACAATTGAGCGAGTTTCTAAGCTGCCTGTGCGGCAGTGAACTCAGTCCCGTTATGGTGCTGGT GTTGCCCGTAAGTTTCTAAGCTGCCTGTGCGGCAGTGAAC >Yersinia_pestis_Microtus91001 TTTGATTATTGCCTGTGCGGCAGTGAACTCAGGGGACTGGCGAACAATGTCTTTCATGATTTTCTAAGCT GCCTGTGCGGCAGTGAACTCGCCATTCCGTGAACCTGAGCGCGTTCGCGATTTCTAAGCTGCCTGTGCGG CAGTGAACTCGGTCAAACAAATTTAGGCGACGATTTAATTTCTAAGCTGCCTGTGCGGCAGTGAAC >Yersinia_pseudotuberculosis_IP_32953 GTTCACTGCCGCACAGGCAGCTTAGAAAAAGTAAGGCACAGAAGGTTGTCACAATGACAAGTTCACTGCC GCACAGGCAGCTTAGAAAACAATATTTTTTCCACTAATTATCATATTAGAGTTCACTGCCGCACAGGCAG CTTAGAAACTGGGCCTCGCTGCTAAAATGATCGTGCTCTTGTTCACTGCCGCACAGGCAGCTTAGAAATC AGGCTGGCGGCGAAATCACCACCTTTGCATGTTCACTGCCGCACAGGCAGCCCAATAA >Yersinia_pestis_Nepal516 TTTGATTATTGCCTGTGCGGCAGTGAACTCAGGGGACTGGCGAACAATGTCTTTCATGATTTTCTAAGCT GCCTGTGCGGCAGTGAAC
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