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CRISPRs details
NC_005871_1
Flanking alignement tool
Page manual
  
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NC_005871_1                                                                                                                 
top
Strain :
Photobacterium profundum SS9
RefSeq :
NC_005871 (plasmid pPBPR1 )
CRISPR id :
NC_005871_1
DR consensus (29 bp) :
CGGTTCAGCCCCGTGAGTACGGGGAACAC
Number of repetitions :
65
Begin Position :
39353
End Position :
43288
39353
CGGTACATCCCCGTGAGTACGGGGAACAC
TTGTGGGATATTTAACGGAAGCTAAAGTGGATG
39414
39415
CGGTTCAGCCCCGTGAGTACGGGGAACAC
TTAATGAATCTAAGTGAAGCCGTTAACGTTAT
39475
39476
CGGTTCAGCCCCGTGAGTACGGGGAACAC
TTAATGGGTGCAGTGGGTACGGGTGACAACTT
39536
39537
CGGTTCAGCCCCGTGAGTACGGGGAACAC
AGCAACAACAGGCTTTCGGTTCGAACCTCAAC
39597
39598
CGGTTCAGCCCCGTGAGTACGGGGAACAC
CGATACGTTAGAGTTCATCGCTAGAATGAACC
39658
39659
CGGTTCAGCCCCGTGAGTACGGGGAACAC
ACAAAAAGCTATCTGGTGCTGTAGTTCTATAT
39719
39720
CGGTTCAGCCCCGTGAGTACGGGGAACAC
AGGTTCAAGGGACAACGGCCCAACTGTTACAA
39780
39781
CGGTTCAGCCCCGTGAGTACGGGGAACAC
TTCGAGGGCGCACATTCAATTAAACGGGTGTG
39841
39842
CGGTTCAGCCCCGTGAGTACGGGGAACAC
TTTCCCATCCTCGCGCTTTCTATTTTTGGAACA
39903
39904
CGGTTCAGCCCCGTGAGTACGGGGAACAC
ATCAGTGATCTTAATGCTACAGCTTGATTCAA
39964
39965
CGGTTCAGCCCCGTGAGTACGGGGAACAC
ACGTTGTGCCATTTATCTCGCTAATCTCACCG
40025
40026
CGGTTCAGCCCCGTGAGTACGGGGAACAC
GTAGCAAGCTGAGTCAGTAAGATAGATACCATC
40087
40088
CGGTTCAGCCCCGTGAGTACGGGGAACAC
GTTGATGAAACAAACCGACCTGATTCAACCGA
40148
40149
CGGTTCAGCCCCGTGAGTACGGGGAACAC
TACACCAAAAGCCCCATCAGGCACGCCGGAAG
40209
40210
CGGTTCAGCCCCGTGAGTACGGGGAACAC
ACCTTACCGATCACTTTAATGATGACCGCATT
40270
40271
CGGTTCAGCCCCGTGAGTACGGGGAACAC
TACATACGTTGGGTTGTGAACATGTGATTCTC
40331
40332
CGGTTCAGCCCCGTGAGTACGGGGAACAC
ATATTTATCCGAAACTTACCCTTTCCTATATC
40392
40393
CGGTTCAGCCCCGTGAGTACGGGGAACAC
TATCAGGGTATTGCTCTTTGAACTCGTCAATG
40453
40454
CGGTTCAGCCCCGTGAGTACGGGGAACAC
ATGGCTATGAAAACTCAAATAGCAATATGTTA
40514
40515
CGGTTCAGCCCCGTGAGTACGGGGAACAC
TCCATACAGAACGCCGTGGAAAACCGTGTGCG
40575
40576
CGGTTCAGCCCCGTGAGTACGGGGAACAC
AAAGAAGGTAGTTCTGAAATTGCGGATACCAC
40636
40637
CGGTTCAGCCCCGTGAGTACGGGGAACAC
TTGTTCAACTCGTCGATGATGTCCGGCATGTC
40697
40698
CGGTTCAGCCCCGTGAGTACGGGGAACAC
TCTTCATCAGTACCGTTCGGAATATTCCCGTA
40758
40759
CGGTTCAGCCCCGTGAGTACGGGGAACAC
GCTAGGCCTAGAACGCTTCGGATACCTGTTAA
40819
40820
CGGTTCAGCCCCGTGAGTACGGGGAACAC
TTTCTCGTGGTCAACTCTTACATGGAACATTG
40880
40881
CGGTTCAGCCCCGTGAGTACGGGGAACAC
CTCTACCTGAGTTTCCTTTTTATTCTCAGCAT
40941
40942
CGGTTCAGCCCCGTGAGTACGGGGAACAC
CTGGCATCGATAAGCGTGACCGCGATGCGGAA
41002
41003
CGGTTCAGCCCCGTGAGTACGGGGAACAC
CGTTGACAGTCTAGCGTTCATCTCATTCATTA
41063
41064
CGGTTCAGCCCCGTGAGTACGGGGAACAC
GCCGTCCATGCAGTAACCGTCCTGAGAGAACG
41124
41125
CGGTTCAGCCCCGTGAGTACGGGGAACAC
GATTTACTAGTTACGCTAATTCTAATTAGTGG
41185
41186
CGGTTCAGCCCCGTGAGTACGGGGAACAC
ATTTGAACGTTACCTGGTGGTGTTTTCTCGCC
41246
41247
CGGTTCAGCCCCGTGAGTACGGGGAACAC
TCAGGTAGTGCATTCAAGGTAAATGATGGTGA
41307
41308
CGGTTCAGCCCCGTGAGTACGGGGAACAC
ACCGCCTGAAAGCCACGAAGGTTACAAGGTAA
41368
41369
CGGTTCAGCCCCGTGAGTACGGGGAACAC
AAAAAGAGGTATAAAGTCAAACCCCTCACCCT
41429
41430
CGGTTCAGCCCCGTGAGTACGGGGAACAC
ATGCTTGGGTGATCTCAACATGATTTTGCCGT
41490
41491
CGGTTCAGCCCCGTGAGTACGGGGAACAC
TGTATCTCCCAATTGGGCACTAACCTTCGAGT
41551
41552
CGGTTCAGCCCCGTGAGTACGGGGAACAC
TTTAACAGCGTGTCCCATTGGTATTTCATAAC
41612
41613
CGGTTCAGCCCCGTGAGTACGGGGAACAC
ATTCAGCCTCATTTTTGTCATTGTCCTAGCTC
41673
41674
CGGTTCAGCCCCGTGAGTACGGGGAACAC
GCGATAAATGCCAGCATCCATTTTTTTGCATG
41734
41735
CGGTTCAGCCCCGTGAGTACGGGGAACAC
ATCTCATTATCTGGCCACAGAAAACCAAGATG
41795
41796
CGGTTCAGCCCCGTGAGTACGGGGAACAC
ACTTTCATAACATCAAATAACTGGAGTAAGAC
41856
41857
CGGTTCAGCCCCGTGAGTACGGGGAACAC
CACACAATTGCAGTCTTCACAGAATGGCTTTA
41917
41918
CGGTTCAGCCCCGTGAGTACGGGGAACAC
TGTATCGAAATGATGCACAACCAGTACGTCAC
41978
41979
CGGTTCAGCCCCGTGAGTACGGGGAACAC
CATTGCATGTGCGTAATCGTCAACTTTGATTG
42039
42040
CGGTTCAGCCCCGTGAGTACGGGGAACAC
GCAGCAATGAGTTTTATTGGTGAGTCGAGAGA
42100
42101
CGGTTCAGCCCCGTGAGTACGGGGAACAC
CGGGAACAGTTACGCCCCGCGTTGGCTGATTA
42161
42162
CGGTTCAGCCCCGTGAGTACGGGGAACAC
ACGAACAGAAACCTGATAGTAGGCATAGTCAA
42222
42223
CGGTTCAGCCCCGTGAGTACGGGGAACAC
GCGTAAAACGCCCTTTGATTGTTGTTTGGTTA
42283
42284
CGGTTCAGCCCCGTGAGTACGGGGAACAC
GGTCGTATGCCTATGGCTTCGGTTGGTATGGA
42344
42345
CGGTTCAGCCCCGTGAGTACGGGGAACAC
CATCAACGATTATCGAAGATGGCGTTATCAAG
42405
42406
CGGTTCAGCCCCGTGAGTACGGGGAACAC
ATTCAAAGTTGATTCAGTGGAAGAACTTGTAA
42466
42467
CGGTTCAGCCCCGTGAGTACGGGGAACAC
CTCACCCAGTGTCACATTACATTTTTTGTATG
42527
42528
CGGTTCAGCCCCGTGAGTACGGGGAACAC
CTACAAGCCCGTATGTTAGCCGGTGGGGGTGC
42588
42589
CGGTTCAGCCCCGTGAGTACGGGGAACAC
GTGATGGCAAAACGTTGGGGTACCGCTCCTGG
42649
42650
CGGTTCAGCCCCGTGAGTACGGGGAACAC
TTCGTCGTACCGTTGGCTCGCATGGTGCAGCT
42710
42711
CGGTTCAGCCCCGTGAGTACGGGGAACAC
GTAAACGATTGCTGGCTTACTGGGCTGCTAAA
42771
42772
CGGTTCAGCCCCGTGAGTACGGGGAACAC
GTGGCCATGTTGCTGCCCGTTACTACAAAGAA
42832
42833
CGGTTCAGCCCCGTGAGTACGGGGAACAC
ATTCCTACTCGCATTTGCTAAGCGATTGCTAG
42893
42894
CGGTTCAGCCCCGTGAGTACGGGGAACAC
ATGTGACATGCCTTGAAGGTGATGTTAATTGG
42954
42955
CGGTTCAGCCCCGTGAGTACGGGGAACAC
ATGAAGAGCGACAACAGCGGCTTTTGCTTTTT
43015
43016
CGGTTCAGCCCCGTGAGTACGGGGAACAC
ATCGCGACAAGAGCAGCGGCGATTACTGATCA
43076
43077
CGGTTCAGCCCCGTGAGTACGGGGAACAC
TTCTTTCATTGCTGCCTGCTCAGCCTGCTCAG
43137
43138
CGGTTCAGCCCCGTGAGTACGGGGAACAC
TGTAACACAGATGTTCCACTTGTCGCCCTAGC
43198
43199
CGGTTCAGCCCCGTGAGTACGGGGAACAC
AGATTGAAAAACAATACCATCAGATCCTATTA
43259
43260
CGGTTCAGCCCCGTGAGTACGGGGAACAC
43288
Left flanking sequence : Till position 39353 (length
bp)
GTATTTATGGATAGAAAAGTGGTGCTTTTGGGGCTTAGGGCAGAGGATTTGAATTGTACAATGTTCGTCG
GTGTCGATTATGTACATACTGTCAAATAGG
Right flanking sequence : From position 43288 (length
bp)
TCTAAAAGTATACACTTGTTTTTATTGAAGAAAACTAAGCTCATAAAAGTTACCAAGTTTTTAAAGAGCA
CAAACAGCTAATTTTTTGGCTTTTTATCTA
Print the CRISPR sequence : From position
bp To position
bp