Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_015518_1                                                                                                                 top


Strain : Acidianus hospitalis W1 RefSeq :NC_015518 (chromosome circular)
CRISPR id : NC_015518_1
DR consensus (25 bp) : GTTGCATCCCAAAAGGGATTGAAAGNumber of repetitions :53
Begin Position : 354893 End Position : 358234

354893GTTGCATCCCAAAAGGGATTGAAATTATAGCAATATTCCTCATTGTTTTAACACCTTCTTAGCA 354956
354957GTTGCATCCCAAAAGGGATTGAAATACTTCTATGAAACTATTGCTACCCCATAGGTCATACTT 355019
355020GTTGCATCCCAAAAGGGATTGAAATTTGCATAAACACCGCCTGCCAGTATGAGGTTATTAGCCAG 355084
355085GTTGCATCCCAAAAGGGATTGAAATCCTATAGTGAAATAGTAATTTGCTATTTTACTCAATT 355146
355147GTTGCATCCCAAAAGGGATTGAAATATATTGGAAGGGGCTTTGTCTTACCCAATCTTTAGAA 355208
355209GTTGCATCCCAAAAGGGATTGAAATTTGTTCCGCAAGTACGTTTGTCTTGCCTTCTTATATTAC 355272
355273GTTGCATCCCAAAAGGGATTGAAATTAATTATTGAATTATCGCGGTCAAAATGAACGGTAATAT 355336
355337GTTGCATCCCAAAAGGGATTGAAATAGAACAATTTCTCATCCTATCGGTTCCCGTTAAAATTTAA 355401
355402GTTGCATCCCAAAAGGGATTGAAATGGTTTTTTCACTTCTTCAGGAGTAGATAAAAAAATCTCC 355465
355466GTTGCATCCCAAAAGGGATTGAAATTTGAATTTCTCACCAGCGTCCTTAAGATTCATCGCTCTCATC 355532
355533GTTGCATCCCAAAAGGGATTGAAATAGACACTATATCCTTTTATTGAAAATATCGTCATTATGT 355596
355597GTTGCATCCCAAAAGGGATTGAAATCAAAGCACGCAAAGTCACTAATAGACATACCACTACCCA 355660
355661GTTGCATCCCAAAAGGGATTGAAATTCCCTAAGATTTTTAGCAATAAATTAAGGTATGTTGA 355722
355723GTTGCATCCCAAAAGGGATTGAAATTCGGTAGCGTCTATAGCAAAGCACATTCCATCAGAAG 355784
355785GTTGCATCCCAAAAGGGATTGAAATTAACGTATTGGTCAGGGCTAAGAACTTTCCTATATGCA 355847
355848GTTGCATCCCAAAAGGGATTGAAATAAGTTCGACCCGTACGCGGTATTCGGGAGGACATTTGC 355910
355911GTTGCATCCCAAAAGGGATTGAAATTTAACAGCATGCTTGTGATAGAATTGTTATGTTTTGCA 355973
355974GTTGCATCCCAAAAGGGATTGAAATAATAAAATCGGAATAGCAAAACCTATTGCACTCAATTCT 356037
356038GTTGCATCCCAAAAGGGATTGAAATGGTACTATCTCTACTTGGTCGCATACAGCGTTTATATCT 356101
356102GTTGCATCCCAAAAGGGATTGAAATTCTAATCTCTTCAAGAAGTTTCATCTTCACGCTTTCTGG 356165
356166GTTGCATCCCAAAAGGGATTGAAATATGAACTCCCAGACCTTGACCTTAACACGTGCGTAGTC 356228
356229GTTGCATCCCAAAAGGGATTGAAATAGACAAGAACAATGGCATTGCCAACTTCATATAGGTAAAC 356293
356294GTTGCATCCCAAAAGGGATTGAAATATGACGGTCTCAGATAACGGCTGTATCGTCACAACAGCA 356357
356358GTTGCATCCCAAAAGGGATTGAAATATCTTAGCTTCAGCGTTATTTACAACGATTTTTATTTTC 356421
356422GTTGCATCCCAAAAGGGATTGAAATTAGAAAGCTACGGGATCCCCATGGAGCTAAGAGGAATC 356484
356485GTTGCATCCCAAAAGGGATTGAAAGATAACTCTACAATATTCCATTACACATTGACTTATCAT 356547
356548GTTGCATCCCAAAAAGGGATTGAAGTAAAAAAATGTAATATCTATTCAGACCCATTGAAATAGT 356611
356612GTTGCATCCCAAAAGGGATTGAAAGATATTGTTGAAAAATAACGGAAAACCTCTTCAGAATAT 356674
356675GTTGCATCCCAAAAGGGATTGAAAGAAAAGGTGATGCGAATGGATCCCCTAAATAAATCTAAATC 356739
356740GTTGCATCCCAAAAGGGATTGAAAGATACGAACTGTTTACAAGGTTAATTAGAGAATACAACAA 356803
356804GTTGCATCCCAAAAGGGATTGAAAGAGATAGGAAACCTTGGTCTTGCTCCATAAAGTTCTGTGTCT 356869
356870GTTGCATCCCAAAAGGGATTGAAAGCTCTCTCAAGATCGGTATATATCTTTTTGACCAAGCAAA 356933
356934GTTGCATCCCAAAAGGGATTGAAAGTTGATGTAATGAAGTCAACGACTTTTTTGGCAACTGAAAATC 357000
357001GTTGCATCCCAAAAGGGATTGAAAGAATACCAATGAGTGAGTGAAATAGAATATATCTCCTCT 357063
357064GTTGCATCCCAAAAGGGATTGAAAGTGAAGGAATTACGTCGGTTTAAGCAAATATACGTGATG 357126
357127GTTGCATCCCAAAAGGGATTGAAAGTTATAACAACCAGTAAAGACATTCTCTATTATTTTTGAAA 357191
357192GTTGCATCCCAAAAGGGATTGAAAGTAAACCTCGACCTCCTGGGTTTAACAGTGCTGTTCTCAA 357255
357256GTTGCATCCCAAAAGGGATTGAAAGAGTTTCCTCATATACGTAATCATATTCCGCCTCTAAGTCC 357320
357321GTTGCATCCCAAAAGGGATTGAAAGTTAATTATAACATCTTCATTCTCTTCCTCATCATACCC 357383
357384GTTGCATCCCAAAAGGGATTGAAAGACTATTACTTTCGTTAAATTCTACTGCAGTAAGCTATC 357446
357447GTTGCATCCCAAAAGGGATTGAAAGGCTTTTTCGATTTGCTTTTTAATCAATTCAACAAAGGT 357509
357510GTTGCATCCCAAAAGGGATTGAAAGTAGAAGCGTGAAGAAAATCGTTGTAATTGATGAGGCT 357571
357572GTTGCATCCCAAAAGGGATTGAAAGGGATTTAATTTATTTGGATATATGACTACTAATATATC 357634
357635GTTGCATCCCAAAAGGGATTGAAAGTGTGAGAAATTGAGTATAAGTTGTACAACGCGATTAA 357696
357697GTTGCATCCCAAAAGGGATTGAAAGGTGTAGTTCTCTGGGTCAGAGCAATATTCGCCAAATTTT 357760
357761GTTGCATCCCAAAAGGGATTGAAAGTTTTCACTATAGAAAAGTACTGGATAGCCTTGAACTTCAT 357825
357826GTTGCATCCCAAAAGGGATTGAAAGACTGTTGTTTAGCCTCTTCCTCCTTCTGAGCCCATTCCTC 357890
357891GTTGCATCCCAAAAGGGATTGAAAGCTATACTTCCGTTTTCATCTTTAATCCTACTTCTAACCC 357954
357955GTTGCATCCCAAAAGGGATTGAAAGATAACTTTACAAGTTCTTCTAAATTCTTTTGAGTCTGC 358017
358018GTTGCATCCCAAAAGGGATTGAAAGTTTATAGCTATTCTGTTAACCTTTATGTTGGTGTTGCACA 358082
358083GTTGCATCCCAAAAGGGATTGAAAGACCTATTTGCGTTAATAGAAAGGAGAAATTCCCGAATT 358145
358146GTTGCATCCCAAAAGGGATTGAAAGTTACAGTAACGTTTATTGTTAATTCGTATTTATTGTCAT 358209
358210GTTGCATCCCAAAAGGGATTGAAAG358234
Left flanking sequence : Till position 354893 (length bp)
AATTACTAGGAAAATTGGTCGCATGATGAACTAAGAGAAGTGATGAAAACTTATTAATGAGGAAAGAGAA
AAATAAGGACAGAGGTTAATAAAACAAACA
Right flanking sequence : From position 358234 (length bp)
AGTAGTAAAGTAATAAATTCGCAAGAAGGAAGTATATGTTATGATATCAGGGACTACAGTGAAGCACTTT
GCTTACTGTCCTCAAATAGTCAGGCTTGAG
Print the CRISPR sequence : From position bp To position bp