CRISPR details
Home
About CRISPRs
News
FAQs
Help
Contact Us
Examples
IGM
Navigation
Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison
Other Tools
CRISPRcompar
CRISPRtionary
CRISPRfinder
GPMS Links
GPMS Team
Tandem Repeats DB
MLVA Web Service
CRISPRs details
NC_015681_1
Flanking alignement tool
Page manual
  
Home Page
NC_015681_1                                                                                                                 
top
Strain :
Thermodesulfatator indicus DSM 15286
RefSeq :
NC_015681 (chromosome circular)
CRISPR id :
NC_015681_1
DR consensus (30 bp) :
GTTCACAGCCTAACTAAAAGGAATGGAAAC
Number of repetitions :
59
Begin Position :
238340
End Position :
242248
238340
GTTCACAGCCTAACTAAAAGGAATGGAAAC
CTAACTCTACTTTCTTTTTCCCCTGCTGTTTTGTAG
238405
238406
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TTATTTTGTAACTTTTCTTGTATCTCATCCCAACCA
238471
238472
GTTCACAGCCTAACTAAAAGGAATGGAAAC
AAAATCCTTGATAAATTCCTGCTGCTATTCTTCTTAG
238538
238539
GTTCACAGCCTAACTAAAAGGAATGGAAAC
AACAATTAAAAAATTCTCCTGCTCTTTCCCCTCCAGC
238605
238606
GTTCACAGCCTAACTAAAAGGAATGGAAAC
GAAGGTTATAGAGCTTTGATTTCTTTAGTTAAACAGG
238672
238673
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TTAGATTTAAAAATTAAGGTAGCAGTTAAAGAAGGA
238738
238739
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TGGGCAACAAATATTTATAAAATCACGCCCCACATT
238804
238805
GTTCACAGCCTAACTAAAAGGAATGGAAAC
ATAGAATACAGCTAAGAAGAATAGCAGCAGGAATTT
238870
238871
GTTCACAGCCTAACTAAAAGGAATGGAAAC
GGGCTTTAAGAGAAGACTTTGGAAAAGTGGTTGGAG
238936
238937
GTTCACAGCCTAACTAAAAGGAATGGAAAC
AAGTCTCAAATATTTAATGCAGTTAGCACAGTATTTG
239003
239004
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TTCCCTTAGAGGGACAGGTTATGTGGTAATAAAATCCT
239071
239072
GTTCACAGCCTAACTAAAAGGAATGGAAAC
CTAACAAAATCTCTCCACTTTCTCATAAAAACCTCC
239137
239138
GTTCACAGCCTAACTAAAAGGAATGGAAAC
ATAGACATAAGTGCGTGGGGGACATACCCATTTGCGT
239204
239205
GTTCACAGCCTAACTAAAAGGAATGGAAAC
GACTGATGGAACATACGGCCTCCATTCAAGCTCTCCC
239271
239272
GTTCACAGCCTAACTAAAAGGAATGGAAAC
GGGGGTGTGGGTGAGGAAAATAGAAAAAAGAGTACTG
239338
239339
GTTCACAGCCTAACTAAAAGGAATGGAAAC
CAAGAACTTATACTTTTTAGGAAAATGTTTCTTAGCA
239405
239406
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TCATTATTGAGGCTGACACAGCACGATGCGAAAGCCC
239472
239473
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TCTTCCTGCTTTTTGGTTTTTGGATATTTTTGGTTACC
239540
239541
GTTCACAGCCTAACTAAAAGGAATGGAAAC
CGATTTCCGCGGCTCTAATACTCCATGGCGGAGCAT
239606
239607
GTTCACAGCCTAACTAAAAGGAATGGAAAC
GGTAGCGTTCAAGGGCTGTTGCGTCAAAGCCTTGCTC
239673
239674
GTTCACAGCCTAACTAAAAGGAATGGAAAC
GTGCGTAACGCCTGAACATTTACCCTGGCATCTGCACA
239741
239742
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TTGATATTATTAGTGAAAATCCTTACTCATTGACTC
239807
239808
GTTCACAGCCTAACTAAAAGGAATGGAAAC
ATATCCAATAGTTATTATTCCTATGACTTCATCTCAC
239874
239875
GTTCACAGCCTAACTAAAAGGAATGGAAAC
ATGGCAAAATAACGGGCCGCCCTTTCTGCAGCCAGAGT
239942
239943
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TTACCTAACCTCTATAAATTTTAGCTTGAACGAAGTA
240009
240010
GTTCACAGCCTAACTAAAAGGAATGGAAAC
ATTAAACTAATTTGGTTAGCAAGAAAACACACCACA
240075
240076
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TAATCATATTCAGATAAGGCCTCTAACAAAGGAACTA
240142
240143
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TTTGGTGGCCGTCATACCCTCCGACTATTTTCACTTT
240209
240210
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TAAAATGTTTTATCCCCTGCCTAATAGTTCCCTTGA
240275
240276
GTTCACAGCCTAACTAAAAGGAATGGAAAC
AAGCTAAACTTCGGGACTTGTGAAATAGTCATATCGA
240342
240343
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TTTCTTCTATGCTCCGCATTATTTATCCTCCAATAAA
240409
240410
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TCGCCACCAGCCCGGATAATACGGGCATTCTTCTAGC
240476
240477
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TCGCCACCAGCCCGGATAATACGGGCATTCTTCTAGC
240543
240544
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TTTTGCCATCGGTCAGGTGCCGGTGGCCGTCCAGGTA
240610
240611
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TAAACTCTGCTTTGGTTAACCCTAGGCCCGCCTTTAC
240677
240678
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TTACCAGACTTTTGGTTAATATTATTAAGCTCGTTCT
240744
240745
GTTCACAGCCTAACTAAAAGGAATGGAAAC
AAAGATTGAGCATCAACAGCGTTAATAATAATGTTGT
240811
240812
GTTCACAGCCTAACTAAAAGGAATGGAAAC
CTTTATTGGTAAAATTATCAATTGTAGAGGAATTGA
240877
240878
GTTCACAGCCTAACTAAAAGGAATGGAAAC
GAAGGACAATGCAAATAATACTAACCGAGAAACCAAG
240944
240945
GTTCACAGCCTAACTAAAAGGAATGGAAAC
CTAAACCTTCTGCACTTCTTTGAATTAAAGCCACTGG
241011
241012
GTTCACAGCCTAACTAAAAGGAATGGAAAC
GATATGGTAATGGAGAAATGAAAACAACAGCGTATTT
241078
241079
GTTCACAGCCTAACTAAAAGGAATGGAAAC
AGCATTTTGGTGAGGAATTTGAGCGTTATATGGGAGT
241145
241146
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TTTTATTATTCATTTCCCCCTTTTTCTATGTATTCTT
241212
241213
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TTTTATTATTCATTTCCCCCTTTTTCTATGTATTCTT
241279
241280
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TAATCCCACCGGAGTGGTTCCGGTTCAGCAATGCATA
241346
241347
GTTCACAGCCTAACTAAAAGGAATGGAAAC
GCGAAACGTCTGGCTTCAAGAGGGGACAACCTGATTCG
241414
241415
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TCGGCACCCACGAGGCAGGAATCTGGCGAAGAGTCGG
241481
241482
GTTCACAGCCTAACTAAAAGGAATGGAAAC
AGCATTTTGGTGAGGAATTTGAGCGTTATATGGGAGT
241548
241549
GTTCACAGCCTAACTAAAAGGAATGGAAAC
AAAAGCTTGAGGTAAAACTGGAAGAAGTCTTCCCTCAG
241616
241617
GTTCACAGCCTAACTAAAAGGAATGGAAAC
AGTACTAACTAACTACTTTCTTAATACTTAACTAATA
241683
241684
GTTCACAGCCTAACTAAAAGGAATGGAAAC
ACCTCATTTCCGAGAGCCTTAGCAATGGCACTTTTACC
241751
241752
GTTCACAGCCTAACTAAAAGGAATGGAAAC
ACCTCATTTCCGAGAGCCTTAGCAATGGCACTTTTACC
241819
241820
GTTCACAGCCTAACTAAAAGGAATGGAAAC
GGTAAAATTTCTTTGTTACGCATATTCACAATCCTC
241885
241886
GTTCACAGCCTAACTAAAAGGAATGGAAAC
CTGGATCGGCCTATCGATGTAATTTTTGGTGCCTTAGT
241953
241954
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TCGTCCATGAGGGCTGGCACGACCGAAACGCTTCGAG
242020
242021
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TTTGAACGAGCTCATGCGGAGGTTCAAAGGGAAGGA
242086
242087
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TTTGAACGAGCTCATGCGGAGGTTCAAAGGGAAGGA
242152
242153
GTTCACAGCCTAACTAAAAGGAATGGAAAC
TGGCCTTACGATAACGGAAGGCGGCTCTGAGAGAGG
242218
242219
GTTCACAGCCTAACTACTAAGGGGAGCACT
242248
Left flanking sequence : Till position 238340 (length
bp)
CACTACTAGGGGTTAAGCGGCTAAAACGCAACTTTCGGAAGAATTGACTTTTCCTGAAACCCTTGGTATT
TAAGTCTAAAATGCTCTTTGAACTGATTGG
Right flanking sequence : From position 242248 (length
bp)
AAATAGGCGACAATTGAGTCATTTTGCGAGCGAAGCGAAGCAATCCCTGAGACTGCTTCGACCTCTAACG
AGGCCTCGCAGTGACAGCGAAGGTTACTTT
Print the CRISPR sequence : From position
bp To position
bp