Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_016510_2                                                                                                                 top


Strain : Flavobacterium columnare ATCC 49512 RefSeq :NC_016510 (chromosome circular)
CRISPR id : NC_016510_2
DR consensus (36 bp) : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAACNumber of repetitions :9
Begin Position : 1680008 End Position : 1680571

1680008TTTTATGTTTTCGTACTCCAAATTAGTTGGGAAAGCCGCTCTTTTATGTTTTCGTACTCCAAATTA 1680073
1680074GTGCTGCCTCCCAATCATCTGCGAAGTTGGGAAAGCTCTTGGTGCTGCCTCCCAATCATCTGCGAA 1680139
1680140TTCTGTAATCTTCAGGCGTAATCTTGTTGGGAAAGCTAGTTTTCTGTAATCTTCAGGCGTAATCTT 1680205
1680206AAACATCGTTTTTGTTCGCACGCATGTTGGGAAAGCAAAGAAAACATCGTTTTTGTTCGCACGCAT 1680271
1680272TTGTTTCTTTTTTATCTTTATTCATGTTGGGAAAGCCTCATTTGTTTCTTTTTTATCTTTATTCAT 1680337
1680338TTCATTTAATAAATCTCTACATTCTGTTGGGAAAGCTCAATTTCATTTAATAAATCTCTACATTCT 1680403
1680404AGATTGGCGGATTAGCCTTATGATAGTTGGGAAAGCATTATAGATTGGCGGATTAGCCTTATGATA 1680469
1680470GATAGAGAGTAGTCGCGCAAAGAAAGTTGGGAAAGCACTCAGATAGAGAGTAGTCGCGCAAAGAAA 1680535
1680536AAATAGTCCAATGGACTATTTTAGCGAAGTAGCCAG1680571
Left flanking sequence : Till position 1680008 (length bp)
ATTTTTTAGTATAAAAAATTGTAGTAATCCCTTACTATGAGAGGCTTACCAGCGTTTAGGTTGGGAAAGC
CCTTATTTTGAAGGGTATCTACAACCGCTC
Right flanking sequence : From position 1680571 (length bp)
GAGGCGCGTGGGCGTTTAAAACCGAATTCAATTTTTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCA
AAAAGTACTAATTCAACATCCAGTTTGTCA
Print the CRISPR sequence : From position bp To position bp