Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_016645_7                                                                                                                 top


Strain : Pyrobaculum sp. 1860 RefSeq :NC_016645 (chromosome circular)
CRISPR id : NC_016645_7
DR consensus (25 bp) : GTTTCAATTCTTTTGTAGGTTCTTCNumber of repetitions :38
Begin Position : 845780 End Position : 848206

845780GCTTCAATTCTTTTGTAGATTCTTCCAGGATTATATTAGAGAAGATCAACTTAGATCCCCCGAATGG 845846
845847GTTTCAATTCTTTTGTAGGTTCTTCAGGCTTAAAGAGCTGTACGAGAGCATACGCAGAATAGCAA 845911
845912GTTTCAATTCTTTTGTAGGTTCTTCATCAGAGACGTACCGCTCCTAGTTGCGTACAAGTGCAACGG 845977
845978GTTTCAATTCTTTTGTAGGTTCTTCTCGACCTGCCAATAGTGCCAGTCCTCCACGGCAGGACCCCGGA 846045
846046GTTTCAATTCTTTTGTAGGTTCTTCCTTATGATTTCAGCGAGTGGCTGTGTGCTTATGATTATGAGA 846112
846113GTTTCAATTCTTTTGTAGATTCTTCCTCTACGCCTCCGTTGCGTCTGAGCACCTTGACTACCTTCCT 846179
846180GTTTCAATTCTTTTGTAGGTTCTTCCAGAGGTATTGATGTCGCGTCGTGTTTAAGCCACAACTCAG 846245
846246GTTTCAATTCTTTTGTAGGTTCTTCATCGAGGACTTGTTCACAATCACCACAGCAACAATGCCTACTG 846313
846314GTTTCAATTCTTTTGTAGGTTCTTCCTCACGGCGGTCTGAGTGTACACGAAGTTAATTTAT 846374
846375GTTTCAATTCTTTTGTAGGTTCTTCACAGACATTATCAGTAATAGGGATGTGGGGTCTGATATTGCAG 846442
846443GTTTCAATTCTTTTGTAGGTTCTTCTAGTGCTGGAGGGTGGAGGTGTTGTTGAGATTAATATCAA 846507
846508GTTTCAATTCTTTTGTAGGTTCTTCACTCCACCGCGGAGCCCGTATACTCGACGCCGTCGACTC 846571
846572GTTTCAATTCTTTTGTAGGTTCTTCTAAAACAAAATAATTCTCTCAATAAAAGTCAACTCTTTGTA 846637
846638GTTTCAATTCTTTTGTAGGTTCTTCAAGGTATTTGGCGCTACTGGCAGACCATATCTAGC 846697
846698GTTTCAATTCTTTTGTAGGTTCTTCACGGGGGGTGGTCTAAAGCATATGCCGCTGAGGAAGTGCTAA 846764
846765GTTTCAATTCTTTTGTAGGTTCTTCTAGATCAATGCGTGAACGTGGGATATACACTCTGCTTACTCTAA 846833
846834GTTTCAATTCTTTTGTAGGTTCTTCGTAAGAAAGTGACACAGAGAGACAGATGAGATATGCAGGCGCG 846901
846902GTTTCAATTCTTTTGTAGGTTCTTCCCCCCACCAAAATCCTACCCCAAATCGCCGAGGAAATAAATGCA 846970
846971GTTTCAATTCTTTTGTAGGTTCTTCAAGAGAATACGCGCGCCACGCCGAGCCACAACAAGAAAAA 847035
847036GTTTCAATTCTTTTGTAGGTTCTTCCAGGAAAGCAGATAGAGGCGCATTCGTTGGCATAGCTAAG 847100
847101GTTTCAATTCTTTTGTAGGTTCTTCCCCCAAAAACCCCAAAGAAAACTTTTTCATAGACAT 847161
847162GTTTCAATTCTTTTGTAGGTTCTTCCGAGGCCGTCAAAATCAAGTCGAACTGGATATGAGTACATTA 847228
847229GTTTCAATTCTTTTGTAGGTTCTTCTTGCTAATTCTTTGCGTGATGTGGTTAGGATATGCGG 847290
847291GTTTCAATTCTTTTGTAGGTTCTTCTTGCTAATTCTTTGCGTGATGTGGTTAGGATATGCGG 847352
847353GTTTCAATTCTTTTGTAGGTTCTTCCGGGTTTAGGGTCATGGAGTGTGTATCATACGACTCAGTGTGG 847420
847421GTTTCAATTCTTTTGTAGGTTCTTCACCACTTGTAGCTCGTGCCCCACGTTGCAACTAGCGTAAA 847485
847486GTTTCAATTCTTTTGTAGGTTCTTCATGCTGAGTCTCAGAATATGGCCTATGCCAGGTGGAC 847547
847548GTTTCAATTCTTTTGTAGGTTCTTCTCATAACCAACAATTTTGTATTTGGCCACGTAGCTTTA 847610
847611GTTTCAATTCTTTTGTAGGTTCTTCGAAGACGCCATACATCTACATCCAAAAAGATTACAA 847671
847672GTTTCAATTCTTTTGTAGGTTCTTCGAAGACGCCATACATCTACATCCAAAAAGATTACAA 847732
847733GTTTCAATTCTTTTGTAGGTTCTTCGAAGACGCCATACATCTACATCCAAAAAGATTACAA 847793
847794GTTTCAATTCTTTTGTAGGTTCTTCGAAGACGCCATACATCTACATCCAAAAAGATTACAA 847854
847855GTTTCAATTCTTTTGTAGGTTCTTCATTAGGCTGGATTTAGTGCCTTATCGCTTAGTTGATATTTTA 847921
847922GTTTCAATTCTTTTGTAGGTTCTTCCCATGGAGTCACAGATCGTGGCAACTATAGAAATGTGGAT 847986
847987GTTTCAATTCTTTTGTAGGTTCTTCTTTTTACGTCTGTGGATGGGATTCGCTTGGGGGTTGGGGGT 848052
848053GTTTCAATTCTTTTGTAGGTTCTTCTACAGGCTGTTGCCTGAAGAACTGGTCAGAGAAATAGA 848115
848116GTTTCAATTCTTTTGTAGGTTCTTCCTGGATATGAGTACGTTTTGTACCACGCCAGGCTACTTATT 848181
848182GTTTCAATTCTTTTGTAGGTTCTTC848206
Left flanking sequence : Till position 845780 (length bp)
AAACACGTCCCAAACCACACCCCTCCACAGACACCCCAACCACCCCAAAGGGAGCCCAGCATCAAGACTA
TATGATGCACCTCAACACGACGTATATCGC
Right flanking sequence : From position 848206 (length bp)
TGTGGGTTTTTATTTGGGATTTTGGTTTTTGCTCTTTTATAAATGTTTCGTGTGCCGTCGAGACTTTTAC
ACGGCGCGGTTTAGGCTAAGGCGGCCGCCA
Print the CRISPR sequence : From position bp To position bp