Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_016804_4                                                                                                                 top


Strain : Mycobacterium bovis BCG str. Mexico RefSeq :NC_016804 (chromosome circular)
CRISPR id : NC_016804_4
DR consensus (36 bp) : GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACNumber of repetitions :30
Begin Position : 3054748 End Position : 3056918

3054748CATGCCGGGGCGGTTCAGGGTTTTGGGTCTGACGACTCGCGGCGAGCACGTCTCACCCAGCAGGCGGTGAGGTTGG 3054823
3054824GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3054898
3054899GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3054971
3054972GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTCGACGATTGGGACATCGACATCGACGCGATCGTCGACGA 3055047
3055048GTTTCCGTCCTCTCTCGGGGTTTTGGGTCTGACGACGTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA 3055124
3055125GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3055196
3055197GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3055268
3055269GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3055341
3055342GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGATCCGCGAAATTCACTGCGCGTTATTCAAG 3055402
3055403GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3055479
3055480GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3055551
3055552GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3055627
3055628GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3055704
3055705GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3055777
3055778GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3055850
3055851GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACGCGGAGCTGCGGCGCCGGATGATGGCGTTGCTCAAGAGCA 3055926
3055927GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTCAAAAACGGGGACGGCATGCTGCATGCCCTAACGTCGT 3056001
3056002GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3056075
3056076GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACAGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3056148
3056149GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3056219
3056220GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3056294
3056295GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACACCCCTGAGCCACGGCATGTGCACGGCTCCGTGTTCAA 3056368
3056369GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTCGATGAATGATGCGCGCCAGCGGTAACGCGTGGGATGT 3056443
3056444GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTCTGAAAATTCGTGGTCAACGAATTGTCGTCGAAAT 3056515
3056516GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACACGGGCCGTGGGGCACTTACGGCGACGGCGCACAT 3056586
3056587GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCCCCTAGCCACGCCTGCCGTGCCATGCCGCGCCGCGA 3056659
3056660GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3056731
3056732GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3056808
3056809GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACGTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3056882
3056883GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC3056918
Left flanking sequence : Till position 3054748 (length bp)
TGCGACCATCCGCACCGCCCGCTCACGCAGCTCCGGCGGGTACCTCCTCGATGAACCACCTGACATGACC
CCATCCTTTCCAAGAACTGGAGTCTCCGGA
Right flanking sequence : From position 3056918 (length bp)
TCTATGGACAATTCGTCCAGCGTGTGGTAACAATGCCTGCTGATGATGTCAAAAGAACACAAACTCCTCT
GCGCTGACAAGCCGTCCCCTTCCGTAGAAC
Print the CRISPR sequence : From position bp To position bp