Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_017459_1                                                                                                                 top


Strain : Haloquadratum walsbyi C23 RefSeq :NC_017459 (chromosome circular)
CRISPR id : NC_017459_1
DR consensus (37 bp) : GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACNumber of repetitions :44
Begin Position : 403466 End Position : 406637

403466GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACCCTTCTAATTTGGTGCACCGTTGAGACAGTGACATC 403538
403539GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACAAACCGAGTGACTGCCAGGCGTCTCCTGCCTGCCG 403610
403611GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACGGGATTGAAGTAGCTCCCGGAATTCTCCCGCTTTAAT 403684
403685GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACAAGCCGAATCGCTGGGTCAATTGAACATACTACGGTGG 403759
403760GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACGCTATCATCATCGTCACCGCCACCACCGAATGATGGC 403833
403834GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACGCGGCTCCGTCTTCACGACTAAAACAGCAGAAGATC 403906
403907GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACGTTTATCTTCCTCAGGTTCGAGTTCAAACCCAATTT 403979
403980GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACATTCCTCAGTTTTCGAGATTGGTTGGTGCTAGCCAT 404052
404053GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACAATTCTCTCAGACTGTACTGTCGTTGTGAAGCGTC 404124
404125GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACCACGTTTGGTTGTCGGGCTGGCACGGTCAACCGC 404195
404196GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACCAGTCCCAAGTAGCGCAGCATCGTCCACCCAAGTAG 404268
404269GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACTATTTGTCACGGCATTGCCATCTGTATCAGTATCGGTAT 404344
404345GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACTGATTATCATTCACACACCATGACACATTCTGCTGCT 404418
404419GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACTAACTCTCCAAAGTGTACAAATTGCGGTTCTCATG 404490
404491GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACGCAGCCCCCGTCTTCACGACAATAAATCTGGTATAAA 404564
404565GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACGAAAATGCAAGTACAGGAGTTGGTAAAACAACTTGTGCT 404640
404641GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACAATAGACAACAGTTTAAAGGAATAGACAGTCTTTTAG 404714
404715GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACAATTGGATGTATGAGCAGTCTGTGAAAAATGGGTTC 404787
404788GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACTGCACGGAACTCTCGAATATCGATAAGATTACCTGT 404860
404861GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACATGACTCCGACAGAGGACCCAGTGAATACTGTT 404930
404931GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACACATGGGCAACTGGCGTAGGGTTGACTGCCGTAGAGG 405004
405005GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACAACACGGGATGATGTTCGAAAGCTACGCCGAAT 405074
405075GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACCTGATGTTTTGGTCACTGCTCAGAAAAACACGGCAGC 405148
405149GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACCTGATGTTTTGGTCACTGCTCAGAAAAACACGGCAGC 405222
405223GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACTTTCAAAGCCGACGGCGAACAGCACTGCCGGCAAGT 405295
405296GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACCTCTCAGCCTCAACGGCATTCTTTGCAGCCTTAATC 405368
405369GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACTATTTGCATGAGCTAACCCACGTTATCGCTGTTTA 405440
405441GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACTCCCCGTGGTCAAATCCGCTGTCTTAACTGTATTAT 405513
405514GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACAGCACGGCTAACGACGTGGTGGATCTAAGTAAGCC 405585
405586GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACTGGTTGACCGGTGAACTGGGAACACCGGGAACACAGAC 405660
405661GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACATTGCTATCATTGGCTATGTGCTGCTGCAACGTGTT 405733
405734GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACCGCCGAGGAGGCAGTCGCTGCCGTGCTGTCTGTTCG 405806
405807GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACACTCCGCGAGGATAGTAATTCAAAATTGGTGAAAA 405878
405879GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACGATGATCAGCCAGTTCAACATGATGATCCAGGTCG 405950
405951GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACGATGAGTCGTGAGCGTAGATCGTCTGTGGTTGATTG 406023
406024GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACGATGAGTCGTGAGCGTAGATCGTCTGTGGTTGATTG 406096
406097GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACACCACTTTCCTCGTGGATTCTAACACGTTGAGTTC 406168
406169GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACCCGGCGGCTTCGTCCAAGACAATCACGGAGGGTTGGT 406242
406243GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACACCAATAGGTTAGTTCTCGCCAGTGTTCATCATGT 406314
406315GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACACCATCTAGATCAAGACAGAAACCGGTCTGCCTCAGT 406388
406389GTTGCAATGAAGAGAAAACCCGCTAAGGGATTGAAACCCGATCCACCGAAATTCGTGAAGTGACTACCTG 406458
406459GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACGATACGAGTTTTCTAACTTGGTTCGGACGGTCT 406528
406529GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAACAGAGTCCCCGAGTCCGTCGAGATCCGGGAGTCCAA 406600
406601GTTGCAACGAAGAGAAAACCCACTAACCAATAAACCC406637
Left flanking sequence : Till position 403466 (length bp)
CCCTTATTAAATGACTGTACAGCCACAGTCAACGTAATAGGGGTATGATTTTGACTCCTGAGAAAGCTTT
TTGAGTATTATACCCGTATTTTAACCCCCT
Right flanking sequence : From position 406637 (length bp)
TGCCGTAATCGTCAAACTCGCAATCATGAGGGCACAACTGAGCAGCCCTACTGAATTCTCAGGATTTTCG
AGTCATATTCTCACATTATTGATCTCAGTT
Print the CRISPR sequence : From position bp To position bp