Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_017461_5                                                                                                                 top


Strain : Fervidicoccus fontis Kam940 RefSeq :NC_017461 (chromosome circular)
CRISPR id : NC_017461_5
DR consensus (24 bp) : GAATCTGTTAGATAGAATTGAAAGNumber of repetitions :18
Begin Position : 61768 End Position : 62836

61768GAATCTGTTAGATAGAATTGAAAGTGAGGATGACTACATTGTAGTGCCTCCACAGAGACAGC 61829
61830GAATCTGTTAGATAGAATTGAAAGTGTCAACTTCAAGCTGAATTACTTGCTGCTGATCGCT 61890
61891GAATCTGTTAGATAGAATTGAAAGTTTGTGCCACTTTTTGCGATCGGCGCGATTGTGCTAAAT 61953
61954GAATCTGTTAGATAGAATTGAAAGAAATCCGCTATTTCATCTTGCTTACTTTTGTCTTCG 62013
62014GAATCTGTTAGATAGAATTGAAAGGACGAGTTCGTTTCGTATATGTCAACGCTGGGGATCC 62074
62075GAATCTGTTAGATAGAATTGAAAGTTCTCTTAAGTTTTCTATGTCCTCTTCGATTGTTTTT 62135
62136GAATCTGTTAGATAGAATTGAAAGTTAGTTTCTTCTCGTATAACTCCTGCCAAAGGTAGT 62195
62196GAATCTGTTAGATAGAATTGAAAGGCAAGTGTGCTTTGTTGTTGTTGTTGCGGTTGCTTAGCT 62258
62259GAATCTGTTAGATAGAATTGAAAGGCGTTCAGTTGGCTAATAAACGTAATTGCGCCTACCAA 62320
62321GAATCTGTTAGATAGAATTGAAAGCTCCAATGCCTGGGGCACTAGAGTTATTATTATTAT 62380
62381GAATCTGTTAGATAGAATTGAAAGTAATAACGAGGCCTTCGTTCTCGAGCTGTTTCAAAT 62440
62441GAATCTGTTAGATAGAATTGAAAGACTCCTAGCCCAATATCAATTAATGCAAGTTCTGTAGA 62502
62503GAATCTGTTAGATAGAATTGAAAGTATAACATGCATCTTATCACCTAAGCTATCATCTTCCTG 62565
62566GAATCTGTTAGATAGAATTGAAAGGCTTTAGATATCTCGTGTTCCTTCAGATAGTATTTAA 62626
62627GAATCTGTTAGATAGAATTGAAAGCTTGTTATTTTTCCTTGGCTAACGAGACTGTCTAAGT 62687
62688GAATCTGTTAGATAGAATTGAAAGTTAGACACGGCGAGACGCAGATAATACCCTGGACCGGA 62749
62750GAATCTGTTAGATAGAATTGAAAGTATCGTGCATAACGAGTTTAAAGAGTGAGTACCAATCGA 62812
62813GAATCTGTTAGATAGAATTGAAAA62836
Left flanking sequence : Till position 61768 (length bp)
GAATTGATGGTCCTTTCGCGATTTTTTCGAGCGAGGGCGAAAAGCTTTTATTGATAATACGCCATTATAA
ATAATAAGAATGAACGCTACAAATAGTGCA
Right flanking sequence : From position 62836 (length bp)
GCGATTCCGAAAAAGATATATAGTTTATAGCTAAATAGAAGTTTAGGAGAACTGCCTTGAGCGAGAAAAA
GTACCATGTAATTGTAACCGTAGGGACAAG
Print the CRISPR sequence : From position bp To position bp