Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_017957_6                                                                                                                 top


Strain : Tistrella mobilis KA081020-065 RefSeq :NC_017957 (plasmid pTM1 circula)
CRISPR id : NC_017957_6
DR consensus (37 bp) : GTTTCCATGACCGGAGCGATTGGTCATGGCTTCAAACNumber of repetitions :9
Begin Position : 416140 End Position : 416721

416140AGACTCATGACCGGAGCGATTGGTCATGGCTTCAAACGTGTTATTGCCGCGGCGGGGCGGGAAATA 416205
416206GTTTCCTTGACCGGAGCGATTGGTCATGGCTTCAAACCTGTTCATCGATGCCTTCAAGCTGGGCATCAT 416274
416275GTTTCCATGACCGGAGCGATTGGTCATGGCTTCAAACGCGTCGACTCCTACAACAAGGAGCACGGCCTGGA 416345
416346GTTTCCATGACCGGAGCGATTGGTCATGGCTTCAAACCACTCAATCGCCAAAACCTATCCTCTCGA 416411
416412GTTTCCATGACCGGAGCGATTGGTCATGGCTTCAAACACGGGCCGTTCCCGTTCCTCGACGTCGCCAG 416479
416480GTTTCCATGACCGGAGCGATTGGTCATGGCTTCAAACCATGACCATGACCGTTTCCGATCTCGTTCTG 416547
416548GTTTCCATGACCGGAGCGATTGGTCATGGCTTCAAACGAGACTTCGCATGCGGTCCTCGTTTTTCGCC 416615
416616GTTTCCATGACCGGAGCGATTGGTCATGGCTTCAAACTATACACTGTATAAGGAGGCGAAGCAGCGGAG 416684
416685GTTTCCATGACCGGAGCGATTGGTCATGGCTTCAAAC416721
Left flanking sequence : Till position 416140 (length bp)
ACGAGGCTATCATCCGGACGGGTGAGCGGGAAGAGTGAAGGGTCACAGGATCGGAGGGGGAGAGGATCGC
TTTTGAAAAGGAAGAGGGTAAGACACAGGA
Right flanking sequence : From position 416721 (length bp)
TCCCCCTCTTCCAGGCCATTGTCAAGATATCCTGTTTTGGTCCATTTTCCGTCGGGATCGGGATCATTTC
ATACACAGGTATTCGTCCCTTGAAGACATC
Print the CRISPR sequence : From position bp To position bp