Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_017958_2                                                                                                                 top


Strain : Tistrella mobilis KA081020-065 RefSeq :NC_017958 (plasmid pTM3 circula)
CRISPR id : NC_017958_2
DR consensus (32 bp) : GTCGCACCCCTTGCGGGTGCGTGGATTGAAACNumber of repetitions :7
Begin Position : 504628 End Position : 505054

504628GTCGCACCCCTTGCGGGTGCGTGGATTGAAACACCTTCGACGCGGTGTATGACGCGCCATCGACAG 504693
504694GTCGCACCCCTTGCGGGTGCGTGGATTGAAACTCGATGACGACCGAGTGGAGTGCCCCGGGTGCCTC 504760
504761GTCGCACCCCTTGCGGGTGCGTGGATTGAAACCGCGGCGATCCCCGCCAGCCCGCCGGGGTGTGC 504825
504826GTCGCACCCCTTGCGGGTGCGTGGATTGAAACCGAAAAAATCGAAACAAACCGCTTTACAGGGAG 504890
504891GTCGCACCCCTTGCGGGTGCGTGGATTGAAACCGCGGTGCTCGGTGCCGACACGCTCGGCATCGAG 504956
504957GTCGCACCCCTTGCGGGTGCGTGGATTGAAACCGCAGATGCCCGCACCGTTTTGATTTGTAATACG 505022
505023GTTGCACCCCTTGCGGGTGCGTGGATTAGTAA505054
Left flanking sequence : Till position 504628 (length bp)
TTTGCAGTGACGTCACACACATACCACCGCATATCTCGCCCCGAGGTTCGCGCAAATCGGCTTTTTTCCG
ACGCTGAATCAGGATATTAAAAGGGGGTGA
Right flanking sequence : From position 505054 (length bp)
CAAAGCGCCGATCGACCGCTCCGGGACGCATGGACATCGCCGGATCAGGAGGTAGGAGATGGCCACCACC
AGCAGAATCTCCATCACTCTCGCACCGGAA
Print the CRISPR sequence : From position bp To position bp