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CRISPRs details
NC_020419_4
Flanking alignement tool
Page manual
  
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NC_020419_4                                                                                                                 
top
Strain :
uncultured Termite group 1 bacterium phylotype Rs-D17
RefSeq :
NC_020419 (chromosome circular)
CRISPR id :
NC_020419_4
DR consensus (32 bp) :
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
Number of repetitions :
113
Begin Position :
331298
End Position :
338700
331298
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TCCGTTACTGCGTAATAGCGTATATCAGCACCC
331362
331363
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TGGATACCGCCACCACCGCCGCCACCTCCGCCG
331427
331428
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CCACAACACACGAAGTTATTGACAACAATATGTA
331493
331494
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TGCGGAGTTAATTCCATAGTACCTAAAGCAGTAT
331559
331560
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CCATTCGCGCCCCACAAAAAACTAGCTTTGCTAG
331625
331626
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TCTAAACCATTGTAATGATATATATCCATTTCT
331690
331691
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TTCCACGCGTAACTATTTACAGCGATAAACAAA
331755
331756
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TGCGAGTAAATGGGACAAAAAAGAAAGCCCTAAA
331821
331822
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TAAAAATGGAAAAGATTTGCTGTGTTATGAAAAAG
331888
331889
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CGATAACAGCCCAGAAAAATCAGGACTGGTAAAA
331954
331955
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CCAACTACTTATATTCCTCCACTGTGTTCCTGAAA
332021
332022
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CCTCTAATTCCAACTGACATTCGTATGCATTTCC
332087
332088
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TGGTATAAGATATTTTTTTTTCTGACCTTCAA
332151
332152
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TGTTTGCTGATTTATCTAAATCGTGGCGAGTAG
332216
332217
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CTAATGCGAGGTAAGGATTTAAGCCTGCTTCTT
332281
332282
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TCTATATATCTGCCACCTGCACGAGCCGCTCTCTC
332348
332349
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
AAAAGTGATTGTTTGTTTGCCTGCTATCACTTC
332413
332414
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CTCAATACGTCCTCAAGCAGGTTCCTCTCTCCCGA
332480
332481
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TGTGCTTAAGTTTTGTATTACCATATATTCTG
332544
332545
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TGCTGTCATCCACCGCAAAAAGGTTGCACAGTGCG
332611
332612
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CTTGCAAGTGCAGCATTTTGCTCCTCAAGCTCT
332676
332677
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CTGCAAAGCTGTAAATACTGAAGCAAAATGGGCA
332742
332743
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TACAGCCGTGCTTCCAGTGCCAGTACCAACAACAA
332809
332810
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TACCACCAACACATATTAGCACCGCTAGTATAA
332874
332875
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
GCTGCACCACATCCGTTATAATCGTAAATTGTTG
332940
332941
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CCGCCCGCCAGTAAACTTACGGTACAATGCCA
333004
333005
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
AGAACAGCCAGCAGAGAGATGTAGAGACTATGC
333069
333070
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TTGTACGTATGTTGCCTAAAAGGGTGTGAAGCG
333134
333135
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TAATCCAAATGGTGATAACGGTGGCGATAATAA
333199
333200
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TGGCGATACCAGCGGCAATAAGTACTCTGCGAA
333264
333265
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TTGAATTTTAATTGTTTCAGGAGGTGCTAACTCT
333330
333331
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CTTCTAAACCTGTAACAAATTCTAACGCCTCAT
333395
333396
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TTGCATTCTGCTCGCTGCAAATTCATAGGCTGG
333460
333461
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
ATAATTGTGCTTATCATTTTATTCCCCTTTAGAA
333526
333527
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
GTCAAAAACCAGATTATTTAATATGCTTGAGTTT
333592
333593
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CTTAAATTTCGCATACGATAAATCATTATCAATC
333658
333659
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TGTGGCTGACCAAGAGCGGATAGCGAAAGCTCAA
333724
333725
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
GCTTCCAAAACTGCTAAATCTTTTTTCATTCGGCA
333791
333792
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TGCAGGGGAGTATCCTGTTGAGGAAACGCTGGT
333856
333857
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TCGCAGAAAATCTTGCTCAAATCTAATACGGTATG
333923
333924
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CTGCCAGTCCGCACATTGCACGTTAATTATACT
333988
333989
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TTGTTTTGCTTGAAATCTAGCCAAAATGCCTGA
334053
334054
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CAAATCCGCGCCAGTTGGCGCATAAGATTTTTT
334118
334119
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CCGCAGAACAAAAAGAACTTGACGCAGAAATTGAC
334185
334186
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CAGCGTGGACGCAAGTGCTATAGACGGTAGTTCA
334251
334252
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TAAATAGGTTATACTGGTATCTATTTTTTTTAG
334316
334317
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CACTCTTGGCAAAATTTGTTTTCCTTGAGAAATA
334382
334383
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TTTACATCTAACCAGCTGGCTTATTATGACATAC
334448
334449
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TTGAGAGAGAAGTCCATTTTTGTATATATCCTTT
334514
334515
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TTGTTCTCCTTCGGGCGGTTCTGGCGCTGCGTAA
334580
334581
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
ATCCTCGCGGGCATAGCTCTCGCAGGTGATTTC
334645
334646
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TTCTCTTGAAGCCCCATACTGCCACGCTGGCAG
334710
334711
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CAAACTGGCAATCGCCAGAAACTTTTCTGCAATT
334776
334777
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TTTACGGCGTTGCTCTGTTATCCCAAACATATCC
334842
334843
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
ATTCACAGCTGTGTAATTACCATAATATAGCCTG
334908
334909
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
AGCCCCTCTGGGCTGTTATAGTGTTCGGCAACCG
334974
334975
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
AAGTATTTATCACTACAATCATATTTTTATTAA
335039
335040
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CCACAAATCTTGATATGGAGTTTTCAGCAACCA
335104
335105
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TTAGAACTCCCCGTTTTAACTTCGCCCCCATCTA
335170
335171
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CGCCAGTTCTGGTGTCCACTCATCGTGCTGGTCTG
335237
335238
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TCGCTATTAAACGCTTGTTGTGGCAGAGTATG
335301
335302
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CAGCAACATTAAGTGTTCCGCCACTGCTTCCTC
335366
335367
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
AAGGGCTTGACATATTTACAAATATATATTATAA
335432
335433
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CGCCCTGAATATCCCGTGCTGGCTTTTAGGTGAT
335498
335499
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
ATATCGCCTTCGTTATAGGTGCTATCAACATCCC
335564
335565
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TGTACACCAGCGAGCTTAATGACAGCAATGAACG
335630
335631
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
AGGGTATGAATGCTTACGGAAGCTTATCTGCTGCG
335697
335698
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CGTACTCTCTAACTCATTGGCTTCCATCATTTATA
335764
335765
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CATTTCTGCCGCTTCACTTCTGCCCTTTACAGGCA
335831
335832
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TTTTTAGTGTAATACTTGCCTCAAGCTCAATAAAA
335898
335899
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
AGCTCTAAATATCCCGTGCTGGCTTTTAGGTGA
335963
335964
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
AAGAGATATTAGATATATTAAATCTGCCTCATA
336028
336029
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TATAGAAGGTTTAATGTGTACGCTTGAAATGTTTG
336095
336096
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
GTAGAAAAAATCGTTTGAGCAGAATTACCAGCAA
336161
336162
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
GTCAACAGCAAATAAGTTGCACAATGCGTATTTT
336227
336228
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CATATATCCTCTCTGTGCCGATTGGCACTTTAT
336292
336293
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TTGCAGACCTTGTTTCAGCTGCGGGCGGTGATGA
336358
336359
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CTAAAAACGGCAACATCCTGCTCCATTTCGTTCCT
336425
336426
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
ATTTATTTTCAGGTGCTTGTGCCTCTGGAACCTT
336491
336492
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TAGTGTCCCGCTCTGGAGTATAACCTTGATTACCG
336558
336559
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
ACCTCATCAAAACTAATCCAAAAAACAAAGGGACG
336625
336626
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CAGTTTGGGGTAAGAGGCGTGCTGATTAAAACAC
336691
336692
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TACAGGGTTCATTTTAATCTTTTTCATTCCTGAAG
336758
336759
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TTGTCTGCGTTGCTGATATAATCTCTCTGCTTCA
336824
336825
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CTCTTAACCGTTACATTTATATCAATGACACTTA
336890
336891
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CCAAAATCTGCTTTCCAGCATAGCCTCTATATAAG
336957
336958
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TAAATTTGAGGAGCAGTGGCGGAGAAAAGCCAGA
337023
337024
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TGCATATCGGCTTTATTTTGGTTATCTTTATTCG
337089
337090
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CCGCCCACTACGGCTGGAAGCTTGTCTATTTCA
337154
337155
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
GCAAAAGAAGGAGTAAATGATATAGTCTGTTTTCC
337221
337222
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
AAGTTCAAGCTCTAGCAGTTCCAGTAGCAGTAG
337286
337287
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
AGTTCCGACAGGAGAAAAGAGTTCAACATTGTA
337351
337352
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CACTCTCCCGCTGCACCTCCTGTGTTGTACATCCT
337418
337419
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TAAAGGCGGATTTAGAGCAGGATTGCGATTGAA
337483
337484
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TTTATCCTCAAAATATATACGTCCGCCTTGTCCG
337549
337550
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
GGCGGACTGGACGCGAAACAAAAAGCGGCGTTGGT
337616
337617
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TCTTGCAAGCGTGTTGGCTGGCGCCGTGACATCA
337682
337683
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TGCTTTCGCGGAACACAATTGCGTGAGATATACT
337748
337749
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TGAGGCTAATGACAGTACAGGTACAAATCCTAT
337813
337814
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CCATATTTTCAGCTTTTGTTTGCTCCGCCTGTG
337878
337879
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
ATTGCAATCTCGTAATCTAACCTCATTTTTTCAGC
337945
337946
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TGCTTTCGCGGAACACAATTGCGTGAGATATACT
338011
338012
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TTCGCAGAAACGTTCAGTATCAGCGAAATTATCC
338077
338078
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
GCAAAAGAAGGAGTAAATGATATAGTCTGTTTTCC
338144
338145
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
AGTCCATCCAATTTCGTTTGATGGCAGTGGTTTA
338210
338211
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TGTGCTAAAAGGTGTTAAGACTGCAGCTGGCGGT
338276
338277
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TTGCAGACCTTGTTTCAGCTGCGGGCGGTGATGA
338342
338343
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
CGAAGGATGTTCCCAATGAGTAAAGATAATAAA
338407
338408
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
AGGGAATAATGTCTCAACTTGCTTCAGGATTAGG
338473
338474
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TGTGGCATAGATACTATCAAGAGCTGTAATTAA
338538
338539
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
GCCGCCTAAAGAAAGAGCCATACAATTAGCTTT
338603
338604
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
TAGTTAATGTAGCTACGTTATTAGCCATTGTAA
338668
338669
GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT
338700
Left flanking sequence : Till position 331298 (length
bp)
AATAGAAATTGAGAATATGTCAATGGTTTTGTAATAAAAATGGGTGATTCGCATAAATTGTGAAAAATGT
GTTGAATTTTTAATTATTTTTTGTTTAGCC
Right flanking sequence : From position 338700 (length
bp)
CTGTTAAGGGAAAGCGTTATGAGATATTCTTTTCTTTCATTTTAAGTTGTAAGGAGAGTGTGACTAAAAA
CAACAACAACTTTTAAAATATTATTTGAAA
Print the CRISPR sequence : From position
bp To position
bp