Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_020833_2                                                                                                                 top


Strain : Mannheimia haemolytica USDA-ARS-USMARC-183 RefSeq :NC_020833 (chromosome circular)
CRISPR id : NC_020833_2
DR consensus (32 bp) : GTTTCAATTCGCAGCCACGCGTAGGTGGCTGGNumber of repetitions :18
Begin Position : 1333336 End Position : 1334505

1333336GTTTCAATACACAGCCACGCGAAGGTGGCTGCCTATTGTCGCCCTTGATTTTCCAATTCAAGACGAG 1333402
1333403GTTTCAATTCACAGCCACGCGTAGGTGGCTGCAAATTCAAGATATACAATTGACCGCAACAGATAAA 1333469
1333470GTTTCAATTCACAGCCACGCGTAGGTGGCTGCTTGGTTATAATTAAAATTGATTGCGGTACACGCCCCT 1333538
1333539GTTTCAATTCACAGCCACGCGTAGGTGGCTGCGGGGATTAACCGAACAGGATTGGATTCGTTATGAG 1333605
1333606GTTTCAATTCACAGCCACGCGTAGGTGGCTGCGCGTAGCTAATGGCAGATTTTTACGGCAATTTAGG 1333672
1333673GTTTCAATTCACAGCCACGCGTAGGTGGCTGCCTCTAGCATTAAAATCCAATCGGTAAACGGTAAA 1333738
1333739GTTTCAATTCACAGCCACGCGTAGGTGGCTGCTTTAATTAATAAAATAGCTTTAGCTTTAGATTTAA 1333805
1333806GTTTCAATTCACAGCCACGCGTAGGTGGCTGCCCAACAATGCTTTTCTTTGTATAACCAGCCACGA 1333871
1333872GTTTCAATTCACAGCCACGCGTAGGTGGCTGGTATCATTTATCGCCCGAAAAATCCAAAAATCGCA 1333937
1333938GTTTCAATTCGCAGCCACGCGTAGGTGGCTGGGTAAAAGATTACTACTACCCTATGGCAATAAGTGTA 1334005
1334006GTTTCAATTCGCAGCCACGCGTAGGTGGCTGGCGCAAGCATTGCACCACGGTAACAACGGCTGCTG 1334071
1334072GTTTCAATTCGCAGCCACGCGTAGGTGGCTGGGCGTTTATCAGCATCTGCTCGTGTTACTGTGCCAC 1334138
1334139GTTTCAATTCGCAGCCACGCGTAGGTGGCTGGGTGCAAACTACTCCGATAACCGAAGTAGCAGCGGTG 1334206
1334207GTTTCAATTCGCAGCCACGCGTAGGTGGCTGGGCACTAGGGCGAGTGCAGACGGGCAAGTGTCGGA 1334272
1334273GTTTCAATTCGCAGCCACGCGTAGGTGGCTGGTTGTTTGGATCTCTTAATCTTGATTCTTGAAAAAG 1334339
1334340GTTTCAATTCGCAGCCACGCGTAGGTGGCTGGCCTTATCTTAACTGACTCCGGAGGTATTCAAGAA 1334405
1334406GTTTCAATTCGCAGCCACGCGTAGGTGGCTGGTTTACCGTAGATCAAAATGCCATTGCTCGTTATAGG 1334473
1334474GTTTCAATTCGCAGCCACGCGTAGGTGGCTGG1334505
Left flanking sequence : Till position 1333336 (length bp)
CAGTCTAATTAACAACATACAAATTTGCCATTGATATTTCAATATATATTGATGCGAAGGTAGCAGCCAA
TGGCGAAAACATAGGATTTGTGGGTACACC
Right flanking sequence : From position 1334505 (length bp)
TCCCTATAAGATAACGTATTGAAATATCAGGCTTTTTAGCCCTTTATTCGCTAACGTTTTGTAGAGAGTG
GATAAAGTATAGCATATCGCCAATATATTG
Print the CRISPR sequence : From position bp To position bp