Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NC_021184_3                                                                                                                 top


Strain : Desulfotomaculum gibsoniae DSM 7213 RefSeq :NC_021184 (chromosome circular)
CRISPR id : NC_021184_3
DR consensus (30 bp) : GTGGAACCAACACATTTGATGTATTGAAATNumber of repetitions :12
Begin Position : 537907 End Position : 538658

537907GTGGAACCAACACATTTGATGTATTGAAATCGTCAATGGGAGCTATCGGCTCAACCGGCTCATTTT 537972
537973GTGGAACCAACACATTTGATGTATTGAAATTGTTCAAAAACAACCTGATCAACTGACTGTCTGCCA 538038
538039GTGGAACCAACACATTTGATGTATTGAAATACCCAAATGATTACCTGCTTAAACTGGTTCAGCCAT 538104
538105GTGGAACCAACACATTTGATGTATTGAAATATTTATACAAGAGAGTGGGTTATTACTAGGTCCTTG 538170
538171GTGGAACCAACACATTTGATGTATTGAAATAGCAGCTAATGAATTTGCAAATCGGCCAGCGCTGAC 538236
538237GTGGAACCAACACATTTGATGTATTGAAATAATATCTTGGCCCTTCTTGCCTCGCTTGCATCAA 538300
538301GTGGAACCAACACATTTGATGTATTGAAATTTTTGCAACGGACATAAATTGTTGCAGTCCGGTGTGG 538367
538368GTGGAACCAACACATTTGATGTATTGAAATACGTTACCTTGACGTGCCGCAGGTTAGTATTATTCC 538433
538434GTGGAACCAACACATTTGATGTATTGAAATAAATAGAACGCTTTTCCGCACTCCGGGCAGCATGG 538498
538499GTGGAACCAACACATTTGATGTATTGAAATTTCAAGTCTCTGGTGGAACTCCCCGAGTTTGAAC 538562
538563GTGGAACCAACACATTTGATGTATTGAAATAGGGACACAATGCTATTCGCACGTTGCGTATTACAA 538628
538629GTGGAACCAACACATTTGATGTATTGAAAT538658
Left flanking sequence : Till position 537907 (length bp)
GACTATGCTTGATTAATGTGCAAAACATTGGTTTACCCCCCATTTTTCTGCTGCTCTATTTTGCAAATGA
GGTGCCGGTTTAATTTGCCAATTCACAGTA
Right flanking sequence : From position 538658 (length bp)
GTGTAGATGATGGTGCGCCCGGCATGGGCGCAGTCTAACGGGTGAAAGTCCCGAGTGCGGGTTGATAGTG
CCAAGCACATAGCCAAAGGCAAGGGTGTCC
Print the CRISPR sequence : From position bp To position bp