Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NZ_CP008796_2                                                                                                                 top


Strain : Thermodesulfobacterium commune DSM 2178 GCF_000734015 RefSeq :NZ_CP008796 (chromosome circular)
CRISPR id : NZ_CP008796_2
DR consensus (35 bp) : GTAGAAACCTGCCCTACTTCAAAAGGGATTGCGACNumber of repetitions :13
Begin Position : 1356859 End Position : 1357792

1356859GTAGAAACCTGCCCTACTTCAAAAGGGATTGCGACTAACCTTTACTTCAACTTTTACTTTTTCCTTTTCCTTTTT1356933
1356934GTAGAAACCTGCCCTACTTCAAAAGGGATTGCGACTGATAGTCAAGGGGCTTCATGTCAATTGAAGCTACCAATGT1357009
1357010GTAGAAACCTGCCCTACTTCAAAAGGGATTGCGACTTATTGTCCTACTTACTTCTTGTTGATTTTGTTCGTCCATAA1357086
1357087GTAGAAACCTGCCCTACTTCAAAAGGGATTGCGACAAGGGGATTATAGAACTCAAAGTTTGAAGGATTGTATT1357159
1357160GTAGAAACCTGCCCTACTTCAAAAGGGATTGCGACTCCTCTTTTTCTTCTCCTAATCTTACCTCACCTGTCCATT1357234
1357235GTAGAAACCTGCCCTACTTCAAAAGGGATTGCGACCTATCACAAGGTATCCCATCATGCGGACAATGATCAATG1357308
1357309GTAGAAACCTGCCCTACTTCAAAAGGGATTGCGACAAATCGACTGTTACCTCAACTTTTACTCTTTCCATCG1357380
1357381GTAGAAACCTGCCCTACTTCAAAAGGGATTGCGACCCAACACTTCAAAGGCAGTGTTGCAATCAGTCTTCCCCTAAAAA1357459
1357460GTAGAAACCTGCCCTACTTCAAAAGGGATTGCGACCACCTCCCCCTCTTTTTCTATTTTATTTATCTTCTCTTCCAA1357536
1357537GTAGAAACCTGCCCTACTTCAAAAGGGATTGCGACCCATTGCCCCCATTCCAAACTCTTCCCACACACTCCCTCCCTGA1357615
1357616GTAGAAACCTGCCCTACTTCAAAAGGGATTGCGACTATAATACCTAAACCTCATCCTTCATCTCCTCCTTC1357686
1357687GTAGAAACCTGCCCTACTTCAAAAGGGATTGCGACATGTCCTAGGTTTTCTCCCTTGGACGATTTGCCCAA1357757
1357758GTAGAAACCTGCCCTACTTCAAAAGGGATTGGGAT1357792
Left flanking sequence : Till position 1356859 (length bp)
AGCATAGATTTCATCAGGGTTTCAAAGGGTCATTTTTAAAAATTTAGTTTTATACTAAACTTAAAAAAGT
TAGATTTTATCAGGGTTTCAAGGGGTAAGA
Right flanking sequence : From position 1357792 (length bp)
GTTAAAGGCTTGTGTCTGGATAAACAACCGTCCTAAACAATGGACTTAGAGAATGCCGCCTGTGGTTCTT
GCAATTTATTTAATTTAGGCTATGATTATT
Print the CRISPR sequence : From position bp To position bp