Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NZ_CP012200_4                                                                                                                 top


Strain : Thermococcus sp. 2319x1 GCF_001484685 RefSeq :NZ_CP012200 (chromosome circular)
CRISPR id : NZ_CP012200_4
DR consensus (29 bp) : CTTTCCACACGACTACGTTCTACGGAAACNumber of repetitions :47
Begin Position : 1525333 End Position : 1528555

1525333ACCACCGCACGACTACGTTCTACGGAAACCGGTTGATACTAGACAAAAAGCCATATTTCGGGCATAGACAACAAATCAG1525411
1525412CTTTCCACACGACTACGTTCTACGGAAACTTGATGTTCCCAATGTGCAAGGGAGGATAGTTTGGGT1525477
1525478CTTTCCACACGACTACGTTCTACGGAAACCTGAAAAGAAGAGCTCAAAAGTACCTCGTAGTCATAGACGAAAA1525550
1525551CTTTCCACACGACTACGTTCTACGGAAACTGTAAAAACATCGTAATACAAGACCATGGATGGCATTACGTTGT1525623
1525624CTTTCCACACGACTACGTCCTACGGAAACTCAATAGAAATAATGGACGACAAGTCCAGATATGTGTACAA1525693
1525694CTTTCCACACGACTACGTTCTACGGAAACATAGCACATGGTATCCTTCACAAACACAGAGAGAT1525757
1525758CTTTCCACACGACTACGTTCTACGGAAACGAACGTCTAGTTTCCCAATCCCCACATCGGACAGCATGC1525825
1525826CTTTCCACACGACTACGTTCTACGGAAACATTACAATATCTCATAGGAGTTGCAGAAGAATATTACGG1525893
1525894CTTTCCACACGACTACGTCCTACGGAAACGCGGAAACAGATACCGGGTCGCTTAATATCAGAGATGAATCGTT1525966
1525967CTTTCCACACGACTACGTCCTACGGAAACCCGGTCTTCAGCTATTCAAGAAGAATTAGCCAAGAGGTCG1526035
1526036CTTTCCACACGACTACGTCCTACGGAAACTTTTCACTTTTCCTTCGAGGATTTCACTAAGTTGTTCATCTG1526106
1526107CTTTCCACACGACTACGTCCTACGGAAACCTGAATATCACCGGAAGAGTTCTCTTTCTCTTCTTGCCTACCT1526178
1526179CTTTCCACACGATTACGTTCTACGGAAACTTAAACAACTTTGAAACTTATAAGTTTTGTTAAACAACTACATG1526251
1526252CTTTCCACACGACTACGTCCTACGGAAACCGGGCATGCACAACAACTGAAGAGTGCCAAAAAGGTAGAATACGT1526325
1526326CTTTCCACACGACTACGTTCTACGGAAACAAGTACATAGAAGAATATAGACAAGAATACTGGTGGAC1526392
1526393CTTTCCACACGACCACGTTCTACGGAAACAGAATTAGCAGAAACGCTAGGGTACACCGTGTTGTTCGA1526460
1526461CTTTCCACACGACTACGTCCTACGGAAACACGGAAAAAACGATCACTCCCACCGAGTTGACGATATACT1526529
1526530CTTTCCACACGACTACGTTCTACGGAAACGTCACCGCAACGCCAGGTCGCCTTGACGACACAGTCG1526595
1526596CTTTCCACACGACTACGTTCTACGGAAACGATGTTCGGGGTGGGGAAGAGTGCTGGGAAGCGGGGAT1526662
1526663CTTTTCACACGACTACGTTCTACGGAAACTTTGAGAACATAAGTAGTCCTATGGATGACGTAAGGCTATA1526732
1526733CTTTCCACACGACTACGTTCTACGGAAACGAGTTTCCCGAAAGCTCAAGCAGTGAGCTAATAGAACTCTT1526802
1526803CTTTCCACACGACTACGTTCTACGGAAACCCGCTCTTATCACTCCAAGCGCAACGGTGAGCGGGAGCACGA1526873
1526874CTTTCCACACGACTACGTTCTACGGAAACACAGCCTCGTTTGGGAAATGTCGGGCCAGCTGAAGC1526938
1526939CTTTCCACACGACTACGTTCTACGGAAACTCAAATTCGAAATCCACGAAACTAACAGGGTTTTCAT1527004
1527005CTTTCCACACGACTACGTTCTACGGAAACAGTCGCATTCATTGTGTTTCCATAGCCCTTCTCCACCTG1527072
1527073CTTTCCACACGACTACGTTCTACGGAAACTTGGCCGATAACACCGAGGAAAAAATTAAAGAACGCTTAA1527141
1527142CTTTCCACACGACTACGTCCTACGGAAACCCACGTTTATGTCCAGATCCGAGTTGAACCAATCCT1527206
1527207CTTTCCACACGACTACGTTCTACGGAAACCCCTATGGTTTTTTCAATTATATTATAGAATTCAACCTTTA1527276
1527277CTTTCCACACGACTACGTTCTACGGAAACAAGCACGAAGGATGGTACTTCGATTAGCTTTAAGGTGTTCTC1527347
1527348CTTTCCACACGAGTACGTTCTACGGAAACTGGTGATATGGTGGGAGATTGCCGGAGCGACGGTTAGAGACAT1527419
1527420CTTTCCACACGACTACGTTCTACGGAAACACTCGGTTTCCTTGCGGTGCAGTCCATGGCGCTTGAAGAAGT1527490
1527491CTTTCCACACGACTACGTTCTACGGAAACGGGGGGAAAACTGGCTTACATTAGATATCGATGTCTACAAAA1527561
1527562CTTTCCACACGACTACGTTCTACGGAAACATGGTGGTGATGCCTGCAAGGTGGTGTCCATGGTGCCTG1527629
1527630CTTTCCACACGACTACGTTCTACGGAAACTCGTAGGCAGAGTCCCCATGTAACTGTTCATCAGCTTTGC1527698
1527699CTTTCCACACGACTACGTCCTACGGAAACCGGGGAAGAGCAGTCGTATATTGAACAAATAGGTGGTGTATACAG1527772
1527773CTTTCCACACGACTACGTCCTACGGAAACTTGTAAAACAGTTAGTTAAAGAGTATGAGGAAGAGGTTAA1527841
1527842CTTTCCACACGACTACGTTCTACGGAAACATGAAAGCCTCGAGGCACGTTGTGAGGGCCTTCTACTCCT1527910
1527911CTTTCCACACGAATACGTCCTACGGAAACTGATCTCTTAGAACCACGTCAAATTGAACAAATAAGCGA1527978
1527979CTTTCCACACGACTACGTCCTACGGAAACATGGTCTTTGAATCATCCACTGGGCGAAAAAGTGTTCTA1528046
1528047CTTTCCACACGACCACGTTCTACGGAAACATTAAGTTCGAGGTTCACGAAACCAACCGAGCCTTCAGG1528114
1528115CTTTCCACACGACCACGTTCTACGGAAACAGGTAAGTGTGGGTATAGGTAGTGTGTGTGCGTAAGG1528180
1528181CTTTCCACACGACCACGTTCTACGGAAACTTCCCGCACCGGATATGCCACTGTAAACGGCTTTTGGTATTT1528251
1528252CTTTCCACACGACCACGTTCTACGGAAACGTTTAGTGCCTTCTTCTCAAGCTGTTTTATGTACGCTTCTT1528321
1528322CTTTCCACACGACCACGTTCTACGGAAACTGGTTCCAAGATCAACGCAAACAGGCTTGCTGAGTACG1528388
1528389CTTTCCACACGACCACGTTCTACGGAAACATGCTTTGAGTATCTGCACGATCCTGTACGTTGCATAGACGA1528459
1528460CTTTCCACACGACCACGTTCTACGGAAACAACGAGATCCAGGCTCGTTATTTACAACGGAAGGAGGG1528526
1528527CTTTCCACACGACCACGTTCTACGGAAAC1528555
Left flanking sequence : Till position 1525333 (length bp)
GAAACAAAAATACTTAAATTTTACGCTTTTAACTATCTACAAACCAGCCCCTCCTCTCGAGCATGCCAAT
CTGGGTTATGTAGACGGGCCTCTTCATATC
Right flanking sequence : From position 1528555 (length bp)
CCTCGACTTTTTTCCCCGGATGCCTAAATGGAATAACGTAAGAACTCCTATTTAAACCTTGCCCCGAAAA
CCCATGGCACTGCAGCCCATTTATAAACCT
Print the CRISPR sequence : From position bp To position bp