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CRISPRs details
NZ_CP012288_2
Flanking alignement tool
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NZ_CP012288_2                                                                                                                 
top
Strain :
Pediococcus damnosus GCF_001611135
RefSeq :
NZ_CP012288 (chromosome circular)
CRISPR id :
NZ_CP012288_2
DR consensus (36 bp) :
GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC
Number of repetitions :
20
Begin Position :
1234031
End Position :
1235322
1234031
GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC
GTGATACCAGTGCCGTTTAACGCTGACATC
1234096
1234097
GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC
ACTTTCCAAAAGCCAAGAAAGCTGGTTGAAA
1234163
1234164
GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC
CACTTCCACATTTTTGGCACCATCAAACGCA
1234230
1234231
GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC
CATAAAACATGATAAAGACGTTCAGCATGA
1234296
1234297
GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC
TATTATATGCAGATCCTAATGTTGAACTAA
1234362
1234363
GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC
CACTGATTAGTTTGGTCTCACAATCCAAGC
1234428
1234429
GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC
ACGCAAGACCAAATTGATTCTGGCCCAGCA
1234494
1234495
GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC
ATGGACGTTCATGTATGGCTCATTCTCAAA
1234560
1234561
GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC
GCCCGTTTGGGTTTGGCCTTGAACATAATC
1234626
1234627
GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC
TGTATTACAGGGTTTACATTGCCTACGCGG
1234692
1234693
GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC
AAAAGTTTGTGCTGCCAATGGCAGGAACGT
1234758
1234759
GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGATC
CATTAACAATCGCAAACTCACCATTTCCTT
1234824
1234825
GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC
GTTTGTCCGAACCGTGCGTCATGCACATCT
1234890
1234891
GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC
TACTCAATCGCAAATTGATTCCGCACCGGA
1234956
1234957
GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC
ATCTTATCTGGCATTTCATCACACATACGT
1235022
1235023
GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC
CTGACCATAAAGCTGTATCAGCAACCACCA
1235088
1235089
GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC
CCGGTCGTCGTCGGTTAAGTACCACTCATG
1235154
1235155
GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC
GTGTGGCGTTGGCTAACGTTGTTGAGGGCA
1235220
1235221
GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC
TAATGTAAAAAAGCTTGACTGTATACACAT
1235286
1235287
GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGGAA
1235322
Left flanking sequence : Till position 1234031 (length
bp)
TAATCACGAAGAATTCGATAAATGCCGTTATTGCTACGTTGATCAGGATTTTGTTGATTGGCGTTATTAA
TGTCTATGAGAGTAGCATTATAAAAAAACG
Right flanking sequence : From position 1235322 (length
bp)
TCAGGAGCGGCTTGACGCATTGAGGTAAAATAGTTTTAATTATTATCGTATATATAAAATAAATGAACCT
CAATTGCACCAAAATCTGAACTTCATTAAA
Print the CRISPR sequence : From position
bp To position
bp