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CRISPRs details
NZ_CP013828_3
Flanking alignement tool
Page manual
  
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NZ_CP013828_3                                                                                                                 
top
Strain :
Ruminiclostridium thermocellum AD2 GCF_000255615
RefSeq :
NZ_CP013828 (chromosome circular)
CRISPR id :
NZ_CP013828_3
DR consensus (30 bp) :
ATTTCAATTCCTCATAGGTACGATACAAAC
Number of repetitions :
27
Begin Position :
1918540
End Position :
1920316
1918540
ATTCTAATTCTTCATAGGTACGATACACAC
AGGTCCTGCAGGATATCAGTTAGATACAGATACTTGGGA
1918608
1918609
GTTTCAATTCCTCATAGGTACGATACAAAC
TTCTCCTGCGACTCTCCCAATTTTCAAAAAATCCTC
1918674
1918675
ATTTCAATTCCTCATAGGTACGATACAAAC
CATATTCCAAGTGGATTACCTGCCAGAAAAGAGAGAAA
1918742
1918743
ATTTCAATTCCTCATAGGTACGATACAAAC
TTGTATCCTCCCACTTCTGCAGTTTGGAATACTCTA
1918808
1918809
ATTTCAATTCCTCATAGGTACGATACAAAC
TTTACCGCTTTCATCTTTATATGTTGATGGAATGAAA
1918875
1918876
ATTTCAATTCCTCATAGGTACGATACAAAC
GAGAACACGAAAATAAATGTTTCTTTAATCCTGCTGT
1918942
1918943
ATTTCAATTCCTCATAGGTACGATACAAAC
GCATAGGTTTCCAAGGCAACTATGAGCCCTTCGACCC
1919009
1919010
ATTTCAATTCCTCATAGGTACGATACAAAC
TACTCCGTGAATACCAAGCCAGAGTAAAACACAAA
1919074
1919075
ATTTCAATTCCTCATAGGTACGATACAAAC
GAAGAATGGCTGTGGAATCAATCCAATGAAAAAATAG
1919141
1919142
ATTTCAATTCCTCATAGGTACGATACAAAC
CTGGAACGGTGATTTGAGAAGAGTAGAGATTAACAAAGA
1919210
1919211
ATTTCAATTCCTCATAGGTACGATACAAAC
CACGGAACGGTTTTTTGTGTGGAAAACGGTTTGCGCA
1919277
1919278
ATTTCAATTCCTCATAGGTACGATACAAAC
ATTTCCAACATGTCTGCTATTTCTCTGCTGTCAATCG
1919344
1919345
ATTTCAATTCCTCATAGGTACGATACAAAC
CCTTTTGCTTTTTCAAGAGCTGCAATCGCTTTTGCTTT
1919412
1919413
ATTTCAATTCCTCATAGGTACGATACAAAC
TCATTATGAAGTTGACGGAAAGCCATATCTTGCAGT
1919478
1919479
ATTTCAATTCCTCATAGGTACGATACAAAC
CCCTTCGAACATTTCGATTATGCATGTATTAGAACC
1919544
1919545
ATTTCAATTTCTCATAGGTACGATACAAAC
TGGCTTGGTAAGTATAACACAGAGCAAGAAGCTGAAAATA
1919614
1919615
ATTTCAATTCCTCATAGGTACGATACAAAC
TTATTTCACTGATTCCAATGCCAATGTTTTCAAGTT
1919680
1919681
ATTTCAATTCCTCATAGGTACGATACAAAC
GGATTGGAAGCAGCAACCGCTTCAATGGCAGCTTGTTTAA
1919750
1919751
ATTTCAATTCCTCATAGGTACGATACAAAC
CTGTTGCTGGCGCAATTGCAGACCTCGGAAACACCAA
1919817
1919818
TTTTCAATTCCTCATAGGTACGATACAAAC
ACAAACATGCTGGGTTTCCCAGTACCTATGAATAGGA
1919884
1919885
TTTTCAATTCCTCATAGGTACGATACAAAC
AAGAGGAGGAAGGTTTCAGATGGGAGCAGTGGCAGGC
1919951
1919952
TTTTCAATTCCTCATAGGTACGATACAAAC
GAAGCTATTGAAGTGCTGAGCAGGAAGGGGGAAGAA
1920017
1920018
TTTTCAATTCCTCATAGGTACGATACAAAC
TCCGGCAGAATGGGATCTTACCGACAGTGCCGGCAA
1920083
1920084
ATTTCAATTCCTCATAGGTACGATACAAAC
CTAGACAGTCACGCGCGATTGCCTGTACAATGTTTTCAA
1920152
1920153
ATTTCAATTCCTCATAGGTACGATACAAAC
GAGCTTCAGGTATATCAGAGATATTGCAGTAATTTA
1920218
1920219
ATTTCAATTCCTCATAGGTACGATACAAAC
CACTTGGTGGCCATCAAAGACCACCAACATTTTTTATC
1920286
1920287
ATTTCAATTCCTCATAGGTACGATACAAAC
1920316
Left flanking sequence : Till position 1918540 (length
bp)
GAAGTGAAATTGCTAAAGGCATCATAGTTATTAAGTCTCATTTTGTTACATCTAGGATAAAAACTGGTTA
TAATAGATTTGATTATATAGATGATACTTA
Right flanking sequence : From position 1920316 (length
bp)
AGGGTGATAACATGGCAGAATATTATAAACGGTTTTATGCTATTCGCTCAGTTCTGCATGGTTCTTTAGG
TATAGCACCCGGAGGTCTCGGCTTCCCCGA
Print the CRISPR sequence : From position
bp To position
bp