Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NZ_CP017006_1                                                                                                                 top


Strain : Sulfolobus sp. A20 GCF_001719125 RefSeq :NZ_CP017006 (chromosome circular)
CRISPR id : NZ_CP017006_1
DR consensus (24 bp) : GTACTAACGACAAGAAACTAAAACNumber of repetitions :90
Begin Position : 67 End Position : 5416

67GTACTAACGACAAGAAACTAAAACTTAGGAGCCACTGTTCCAGAACCACCTGAGCCAGAGG127
128GTACTAACGACAAGAAACTAAAACTCACAATAAAACACATTTTCCTTACCAGCTACAGT186
187GTACTAACGACAAGAAACTAAAACGTTATAATAGTTGTTACATCCAAAAAATGAATAAA245
246GTACTAACGACAAGAAACTAAAACGGAGGAAGTGCTAAGCTGTTGAAGTTCTGGGTCTTCAT307
308GTACTAACGACAAGAAACTAAAACTTAGTAAAAAATTCTACATTTGATGTAAACATTTTA367
368GTACTAACGACAAGAAACTAAAACTGCGTAAGATTTCCACCAACTTCATTACCAC422
423GTACTAACGACAAGAAACTAAAACTTATGTCTTCAACTCCCCTTATTATAGGAGAAAG480
481GTACTAACGACAAGAAACTAAAACTGCAGACGTCTGTAGTTTTACAGTATAATAATATAGAA542
543GTACTAACGACAAGAAACTAAAACTTGAACAGTAAGCCTTATCAAACGGCATATCCAGAT602
603GTACTAACGACAAGAAACTAAAACCTGTAGTTGTTTCCCGTATTGGTAAATAGGAGAAAG662
663GTACTAACGACAAGAAACTAAAACTCAAACTTCTCGGTGAAGAGGACATGGAATGCAGG721
722GTACTAACGACAAGAAACTAAAACGTGCCGGTAGTGCCGGTGCCGGTGGTAGTGGTGG779
780GTACTAACGACAAGAAACTAAAACTTTCCACCATTAAGCGTATATGATGTGCCGTTAAGCGTTA843
844GTACTAACGACAAGAAACTAAAACCCGAAGTGTAGACAGTCTGAGTAAGATTTCCAC900
901GTACTAACGACAAGAAACTAAAACCCCTGAGTTCAGTTTGAGTCTGGTTTGGTAAGGTAG960
961GTACTAACGACAAGAAACTAAAACATATGGCTATTTTTAGAGCTACAATTTCAACTGTTT1020
1021GTACTAACGACAAGAAACTAAAACATTTTCGAAATGCCTTAAGCCCTAACTCGATTTC1078
1079GTACTAACGACAAGAAACTAAAACAGAAATTTTAATGTGGGGGGGTGTATTTACCGCGAG1138
1139GTACTAACGACAAGAAACTAAAACGAAAATCCCGAGAATTTTGATCCGCTTTTAGACTTT1198
1199GTACTAACGACAAGAAACTAAAACTACAGGCTAGCATGCCCAATCATCTACCTTCAGG1256
1257GTACTAACGACAAGAAACTAAAACTAGCTCCAATTTGGTAATTCTACAGACCAGTTGAA1315
1316GTACTAACGACAAGAAACTAAAACAGAGATCGACAAAGACATTAGGGAACCTAATGAA1373
1374GTACTAACGACAAGAAACTAAAACATAAAAATTTCCACAAGAGAAAGCTGAAAAAAGA1431
1432GTACTAACGACAAGAAACTAAAACAATAACTCTGGTACTGGTATCAGTAATTCTAATCCATAT1494
1495GTACTAACGACAAGAAACTAAAACTTACATGGTATTGGGTAGGTACAGTTTGGGACAGAG1554
1555GTACTAACGACAAGAAACTAAAACAATCTTGTTTCCATTAACGCGAGAGCTTCCTCTTTT1614
1615GTACTAACGACAAGAAACTAAAACTGTACATAGAGAGATGGGGCGATTTTGTTAGAAGC1673
1674GTACTAACGACAAGAAACTAAAACCTAGTAACCTTCTGGTATTCATATAATAATGGAATATC1735
1736GTACTAACGACAAGAAACTAAAACTATCTACAAATCGTGTTGTTTAACGATCTCAAAAG1794
1795GTACTAACGACAAGAAACTAAAACAATCCAAATGATATTATTCAGATGAAATTAATTGT1853
1854GTACTAACGACAAGAAACTAAAACATAAACGTAATTGAATGGGACGGCGTATCGGACAT1912
1913GTACTAACGACAAGAAACTAAAACGCATCAGAAAGGACTTCTGGTTTAGTGGGATATTATGT1974
1975GTACTAACGACAAGAAACTAAAACCCGACACTGTATCGCTCTCCGTGGACTGACCCACA2033
2034GTACTAACGACAAGAAACTAAAACGTTAACCCGTTAGATACTAGTGGAAACATTAAGGT2092
2093GTACTAACGACAAGAAACTAAAACTGGTCGCTACCCGCATAGACCTTCCAGGCAGCC2149
2150GTACTAACGACAAGAAACTAAAACATGAAAGATGTTACCATGTGGGATAATCATACCT2207
2208GTACTAACGACAAGAAACTAAAACATCTCTAGTTTCCAAAGTAATAAAGGGGTTATCAGA2267
2268GTACTAACGACAAGAAACTAAAACATGAGAGATGGAAGATTGATGATAATTCCAATAAAA2327
2328GTACTAACGACAAGAAACTAAAACAATACTCATATGATTAAGATAACCGGGGTGGTATATA2388
2389GTACTAACGACAAGAAACTAAAACTCCATCCCCTAAATTCTGCGTTTTGTTTCTTTACTT2448
2449GTACTAACGACAAGAAACTAAAACAAAATGAATCTATCAATAATATATGGTTTTCTCCAAT2509
2510GTACTAACGACAAGAAACTAAAACTCGCCAAGCATCGATGGTTACGTCGTATTTTACAAG2569
2570GTACTAACGACAAGAAACTAAAACAATTAGTGCGGTAGATTTAAGGGTTAACGTATTGCA2629
2630GTACTAACGACAAGAAACTAAAACAACACAACCACATTGAACTATAACTATACAAAAC2687
2688GTACTAACGACAAGAAACTAAAACTCTTTTTCATTATTTTTGCTCTGGTATAGACGTCTT2747
2748GTACTAACGACAAGAAACTAAAACTAAGACTTATCACGCCAGTAACAAATATCCGCTTAT2807
2808GTACTAACGACAAGAAACTAAAACCCTTATTTACCCAGTAAACATAGAGTCCACTAA2864
2865GTACTAACGACAAGAAACTAAAACGAGTATCTAAGGGGGGTCAAGATAGGATATATTAA2923
2924GTACTAACGACAAGAAACTAAAACTCACGATGAGAACCGAGGGAAAAAAGGCATATT2980
2981GTACTAACGACAAGAAACTAAAACTATTTCTGAAATCACTGGCAACTACATCAGCGAA3038
3039GTACTAACGACAAGAAACTAAAACTTTATGTTTTTGAACCTCCGGATCATCAAAATCGATAATCTT3104
3105GTACTAACGACAAGAAACTAAAACGCCATTGAGTCAAGTTAGAGACATAGTTGCTACAA3163
3164GTACTAACGACAAGAAACTAAAACATGTGAAAAAAGGGAGACAGCGAAAAAGATAATAG3222
3223GTACTAACGACAAGAAACTAAAACTGGCTTAGGGACTTAATATATCCATGTGGTTCCGTTCCAAAT3288
3289GTACTAACGACAAGAAACTAAAACCTCTCATCTCAGCAAATAATGCCACTTTCAACAGGGT3349
3350GTACTAACGACAAGAAACTAAAACCTAACACCCCCACCACCAAAAAACCCCGGTAAGG3407
3408GTACTAACGACAAGAAACTAAAACATCGAGAGGAATAAGCGGATATTTGTTACTGGCGTGATAT3471
3472GTACTAACGACAAGAAACTAAAACTCCATGGGTTGTCCTAGCATTTCGTAATCCTCA3528
3529GTACTAACGACAAGAAACTAAAACACACTACACAATAGATATCGCTGATCGTGAAATGCT3588
3589GTACTAACGACAAGAAACTAAAACTAGTTGCTGCTCTAATTTCTTAAGCCTTAGTTT3645
3646GTACTAACGACAAGAAACTAAAACTTCTGGATCGCTTGGACTGCTGTGGTAGTAGTCTGT3705
3706GTACTAACGACAAGAAACTAAAACATTGCTTGCCAGATCGTTGAGCAAAGGTGATGATGT3765
3766GTACTAACGACAAGAAACTAAAACTAGCGCATATTCCAGTTGCTTGTAGATTCCTAAATC3825
3826GTACTAACGACAAGAAACTAAAACGCCAATTCTCTGTTGGTAGCATCTCCTAGTGTAAAGTT3887
3888GTACTAACGACAAGAAACTAAAACAGTGGAATCCAGGCTACAACCAATATATTAGTGTA3946
3947GTACTAACGACAAGAAACTAAAACACTTGGACTGATGCAGTACCCCCAGTAATCGCCTCATA4008
4009GTACTAACGACAAGAAACTAAAACCTAAATCCAAACATCTCTGAAAGCTTATCGGTAAA4067
4068GTACTAACGACAAGAAACTAAAACTAAAAACGACACGATGGTAGTGCAAACGGTTGAGA4126
4127GTACTAACGACAAGAAACTAAAACATAATGAGGGCTGGCGCTGCGCGGTTTGAACTGAAGG4187
4188GTACTAACGACAAGAAACTAAAACGCTCCTAGGGACTATTGGAGGGGCATTTATCTTAAGC4248
4249GTACTAACGACAAGAAACTAAAACGAGGAGGGTAGGTTTGTGGGATGGCGATATCTTA4306
4307GTACTAACGACAAGAAACTAAAACTTGTTCTCCCCATCTGACACTGTACCTTTCAGAA4364
4365GTACTAACGACAAGAAACTAAAACCAAAATCCTAATTCTTTTCAAATTCCAGCTGGTA4422
4423GTACTAACGACAAGAAACTAAAACACCTTAATATTATTAGTTTGGTAAATGATCTCTT4480
4481GTACTAACGACAAGAAACTAAAACTGGCTTTTCCAATACCCCCACAACAACAATATCATC4540
4541GTACTAACGACAAGAAACTAAAACACGAGTATGTCTGCATAAAAACAAAACAAAGGTATTTT4602
4603GTACTAACGACAAGAAACTAAAACATTACTCACAATTGGTGTAGTTATAATTATCCTATT4662
4663GTACTAACGACAAGAAACTAAAACTGTTTTAATTTAGGATTTATTGGTGAATATGCAATT4722
4723GTACTAACGACAAGAAACTAAAACTTTCAACGTATTTGTATCCAAAATCTTGTTGACGA4781
4782GTACTAACGACAAGAAACTAAAACATGAAAATGAGATACGCCGTCTTAGATCAAAACAAT4841
4842GTACTAACGACAAGAAACTAAAACATTAGCCGTAAAGCATTTACAAGGACAAACACAAT4900
4901GTACTAACGACAAGAAACTAAAACTGGTAACCCAACTTATGAAATTGCCCCCATACCAATT4961
4962GTACTAACGACAAGAAACTAAAACGCAAGCTGCCGGAGTACCAGGTTGTCTCCAGGCTAGGCTTGTA5028
5029GTACTAACGACAAGAAACTAAAACGTGGTTACAGCAGCTTTCCCAGTGTTATCTTGTACCAATATATT5096
5097GTACTAACGACAAGAAACTAAAACATTTCAGGGTTCTCTCCTAGCTCGATCCACGCTTT5155
5156GTACTAACGACAAGAAACTAAAACATAGCAGAAGGTGGTATGTTAAACATAGTAGCAGC5214
5215GTACTAACGACAAGAAACTAAAACTACTTGCCGTTAAGCCTGAAAACACTGCCATTGATT5274
5275GTACTAACGACAAGAAACTAAAACTTTGACGCTCCTGCAGGACTTCGATTCGAGATAGT5333
5334GTACTAACGACAAGAAACTAAAACACATAAATCTGGGGGGCTACTGATTTTCATGGCTT5392
5393GTACTAACGACAAGAAACTAAAAC5416
Left flanking sequence : Till position 67 (length bp)
GTAAATGCTAAAATACTAACGAAACTAAAACCCGGAGTTCTCGCGGTAAAGAGTCCTCCCACATTA
Right flanking sequence : From position 5416 (length bp)
TTGTAGGGAACAAGATGTTGAGTTTGCCGAAGAGATTGTACTAACGACGAGTGTGTGGACAACAATTTCA
TCCACCCCCCTTAAAATTCAATTTTATTCC
Print the CRISPR sequence : From position bp To position bp