Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NZ_CP017006_2                                                                                                                 top


Strain : Sulfolobus sp. A20 GCF_001719125 RefSeq :NZ_CP017006 (chromosome circular)
CRISPR id : NZ_CP017006_2
DR consensus (25 bp) : CTTTCAATCCCGTTAAGGATGCATCNumber of repetitions :69
Begin Position : 13881 End Position : 18271

13881CTTCCAATCCCTTGTGGGACGCATCGTAGTATATTCCCAGTTTACTTCAATGTATCAAGTTTTGT13945
13946CTTTCAATCCCTTATGGGATGCATCTTGACAACTTAACAGTAGACGATATCTATAAGCTAATAAG14010
14011CTTTCAATCCCGTTTGGGATGCATCTCTTCTACTTGAGTCCACATTCGGACTTGACCTCTTCGG14074
14075CTTTCAATCCCGTTTAGGATGCATCTTTACGCAATAACAGCATATGTTCAACTGCCTACTGG14136
14137CTTTCAATCCCGTTTGGGATGCATCTTTAATTCTCCAACTCCTTCAACATAGTAAGCTAC14196
14197CTTTCAATCCCGTTTGGGATGCATCGAAAAAGTACTGCGGAAATAGGGAATAAAATTATAAATCTAA14263
14264CTTTTAATCCCGTTAAGGATGCATCAGAGTTTTTTTGGTAAAAGAAGGTAAAAGTATAAAATTTGA14329
14330CTTTCAATCCCGTTAAGGATGCATCAAATGTGTGAAGCACAAATCGATCCCCAAATCCAGGAATT14394
14395CTTTCAATCCCGTTAAGGATACATCTCGTGTTCTTAGCCAATTTGTACAACAAATAACAAAGTGA14459
14460CTTTCAATCCCGTTAAGGATACATCTTGAGCAGACACAGGAATAGCATGGGTTGGAACAATTTAG14524
14525CTTTCAATCCCGTTAAGGATGCATCGAGGAAGATAAGGACACTGATCCTCGTAACTGATGGCAT14588
14589CTTTCAATCCCGTTAAGGATGCATCGGAACCGTATAAGGAATACATACATAGGGCATGGGGGAC14652
14653CTTTCAATCCCGTTAAGGATGCATCAGGTGGTGAGACATTCCTTTACCTAAATCAAACTATAA14715
14716CTTTCAATCCCGTTAAGGATGCATCAGATCCACCTAGCGTTACTAAGTTTACGGAAAGAGAGA14778
14779CTTTCAATCCCGTTAAGGATGCATCGGGATCTTTGATGTAATTTACGGTCTATCGTTCCTAGG14841
14842CTTTCAATCCCGTTAAGGATGCATCGTGAACTGGGATTACTAAAGTGGGAAAATGAGGATAAGCA14906
14907CTTTCAATCCCGTTAAGGATGCATCAAGCCACAATATTATGCTTTAGCAAAAATACAAGTACATA14971
14972CTTTCAATCCCGTTAAGGATGCATCGTCTATTATATGTCACTGATTACCAATGTTAAAATTGA15034
15035CTTTCAATCCCGTTAAGGATGCATCTCATATAAGCTGTATGATTGCCATACAATTTTGTAAAC15097
15098CTTTCAATCCCGTTAAGGATGCATCAGTAAACAAACATTTGCTCTAGTTCAGCAGAGCACACAGTT15163
15164CTTTCAATCCCGTTAAGGATGCATCCATACCGAATGGGGCACAGAGTCACAATGTTGCTTATGT15227
15228CTTTCAATCCCGTTAAGGATGCATCAAAAAATCAATTTCTATAGTATAAAGATTTTAGAAGAAAT15292
15293CTTTCAATCCCGTTAAGGATGCATCAAAAAAATATGATATAAACTTTTTATACAAAAGATTTCTATT15359
15360CTTTCAATCCCGTTAAGGATGCATCCAGTCTCAAACCACACAAACCCAAATTAAACAAAAATCCT15424
15425CTTTCAATCCCGTTAAGGATGCATCTTGATGAGAGCAGACCCAGTAACAGCTATGAATTCTTTTTA15490
15491CTTTCAATCCCGTTAAGGATGCATCTTTTTTTATACGCAGATGTTAATAAACTGAAAATAGTTTA15555
15556CTTTCAATCCCGTTAAGGATGCATCGTTTGGATGCTGGGTCTGCACCGTAGTCAAGAACGATA15618
15619CTTTCAATCCCGTTAAGGATGCATCAGTAAACAAACATTTGCTCTAGTTCAGCAGAGCACACAGTT15684
15685CTTTCAATCCCGTTAAGGATGCATCCATACCGAATGGGGCACAGAGTCACAATGTTGCTTATGT15748
15749CTTTCAATCCCGTTAAGGATGCATCAAAAAATCAATTTCTATAGTATAAAGATTTTAGAAGAAAT15813
15814CTTTCAATCCCGTTAAGGATGCATCAAAAAAATATGATATAAACTTTTTATACAAAAGATTTCTATT15880
15881CTTTCAATCCCGTTAAGGATGCATCCAGTCTCAAACCACACAAACCCAAATTAAACAAAAAATCCT15946
15947CTTTCAATCCCGTTAAGGATGCATCTTGATGAGAGCAGACCCAGTAACAGCTATGAATTCTTTTTA16012
16013CTTTCAATCCCGTTAAGGATGCATCTTTTTTTATACGCAGATGTTAATAAACTGAAAATAGTTTA16077
16078CTTTCAATCCCGTTAAGGATGCATCGTTTGGATGCTGGGTCTGCACCGTAGTCAAGAACGATA16140
16141CTTTCAATCCCGTTAAGGATGCATCTATAAAAGGTTTATTAATATACGTTTTCATAATTTCTTT16204
16205CTTTCAATCCCGTTAAGGATGCATCAGGGTGGCTAATGAGAGATGGTGAAACTGTTGAGATA16266
16267CTTTCAATCCCGTTAAGGATGCATCCGGACATACTAATAGCGCTTAGCCAAGAACCTTTAACAA16330
16331CTTTCAATCCCGTTAAGGATGCATCTTGCAGAGTTCACAGGTCACAAGTTAACTAAAAGAC16391
16392CTTTCAATCCCGTTAAGGATGCATCAGTAAACAAAATGTGTTGGTCTACAAACTTAATGTCAGAGAT16458
16459CTTTCAATCCCGTTAAGGATGCATCAAATCACTATTTTTTAGACCTATGTTTTTACAAAATTATAC16524
16525CTTTCAATCCCGTTAAGGATGCATCACAAAGAGAGCTATGAGCTTGGCTGTGACTGTCATGA16586
16587CTTTCAATCCCGTTAAGGATGCATCATATTCTCTTCTAACACTTCATAGTCTTCTAATGTGTTG16650
16651CTTTCAATCCCGTTAAGGATGCATCCATCCCTATTAACATTAAGGATCCCAGAGGATGGGC16711
16712CTTTCAATCCCGTTAAGGATGCATCAAAAGGCTAGTAGTTAAAGATGAGCTCAACGTTTACGT16774
16775CTTTCAATCCCGTTAAGGATGCATCTGTGATGAATATTATTCGTTATGAGCCCCTAGATTTTAG16838
16839CTTTCAATCCCGTTAAGGATGCATCACTATTTTTCTCTTGATGTGCCCCCTAAATTTTGTGAACC16903
16904CTTTCAATCCCGTTAAGGATGCATCAATATCTCACTGATCTTATACTTTATCATTCCAATCTC16966
16967CTTTCAATCCCGTTAAGGATGCATCTGCGAGATAAGGAAAGGAGTCCAGCAATCGAATCAAT17028
17029CTTTCAATCCCGTTAAGGATGCATCTAAAGATTATTACCTTATTATAAGGGTGAAACAAATGA17091
17092CTTTCAATCCCGTTAAGGATGCATCTTAAAGTCAGTGATTGGTAATAGGAAAATTATTGGACATTT17157
17158CTTTCAATCCCGTTAAGGATGCATCAAGAGGATAGCTGAGAAGTTTAAAGAGAAATATGGAGT17220
17221CTTTCAATCCCGTTAAGGATGCATCGTTGAGAGTAAGACCTAGGGAAGGGTTTGATATATTTGCTCT17287
17288CTTTCAATCCCGTTAAGGATGCATCTAAAAGGTGCGGATAAGGGTAAAAAGTACGTATTAGA17349
17350CTTTCAATCCCGTTAAGGATGCATCCTAGCGTTGAAACGTAACATCACTAGGAGCGAGCTTATA17413
17414CTTTCAATCCCGTTAAGGATGCATCAAAAAACTAATTTTTCGATTTTTTCAAAAAGGCTTAA17475
17476CTTTCAATCCCGTTAAGGATGCATCGTTACTCACGACATGGTCTTTTCGGCAATAAAGAGATTAA17540
17541CTTTCAATCCCGTTAAGGATGCATCAAACCTATGGAAAATTAACCCCTTAAACTTCAAGATGT17603
17604CTTTCAATCCCGTTAAGGATGCATCCCAGATACATCGCCAGAAGGTACACCGAAACTGTTATAC17667
17668CTTTCAATCCCGTTAAGGATGCATCTGATTTCTTGTGATCTTATGCGAAATCTTGCGAAATCT17730
17731CTTTCAATCCCGTTAAGGATGCATCAAAGAACCTGCAGGAACTCTGGCACGGGATAAAAAATAG17794
17795CTTTCAATCCCGTTAAGGATGCATCATCAAGGTAAACCCTCAGACTATATAGTGACTCCTTCCCT17859
17860CTTTCAATCCCGTTAAGGATGCATCTTGTTTACTCCCCAGTGTACACTTAATAAAAAAAGGA17921
17922CTTTCAATCCCGTTAAGGATGCATCCTAATATAATCTAGATCTTTGCCCTCCATTTTATAATAA17985
17986CTTTCAATCCCGTTAAGGATGCATCGCTGGGCCAACGACAGAAGCTACATCTTTCATTGCATTAT18050
18051CTTTCAATCCCGTTAAGGATGCATCATATTCAAAGTGCGTATACTTATAAACTCTCTGACATTTT18115
18116CTTTCAATCCCGTTAAGGATGCATCCTTCTATAAACTGTTGAATTTCCTCTTTTGTCCCAATAA18179
18180CTTTCAATCCCGTTAAGGATGCATCATATCATTCCAGCGGATCAAATGGGAAATCATATCCACGTAA18246
18247CTTTCAATCCCGTTAAGGATGCATC18271
Left flanking sequence : Till position 13881 (length bp)
TGTCCTTTTCCCCTTAGATAGTTTACTTCATCGATTCATCTTTATATTTCTCGTGTATCGAGAGAATCAG
AGAACCATTTTTTATGGGGAAGTGTTATAT
Right flanking sequence : From position 18271 (length bp)
TGATTTGTTTATTAACCCCTATGCCTTATCTTCTCCTTCCCCTATAATAAATTTTACTTTACTCACCTTC
CCCTATCATGCGAGGGTTTTTCCTAGTAAT
Print the CRISPR sequence : From position bp To position bp