Institut de Génétique et Microbiologie

CRISPR details


Home About CRISPRs News FAQs Help Contact Us Examples IGM
Université Paris Sud

Navigation

Home page
CRISPRs database
Browse CRISPRs
BLAST CRISPRs
FlankAlign
CRISPRs utilities
My CRISPRs DB
CRISPRs finder
CRISPRs comparison

Other Tools

CRISPRcompar
CRISPRtionary
CRISPRfinder

GPMS Links

GPMS Team
Tandem Repeats DB
MLVA Web Service


NZ_CP020029_3                                                                                                                 top


Strain : Lactobacillus helveticus GCF_001746265 RefSeq :NZ_CP020029 (chromosome circular)
CRISPR id : NZ_CP020029_3
DR consensus (30 bp) : CTTTACATTTCTCTTAAGTTAAATAAAAACNumber of repetitions :11
Begin Position : 1490702 End Position : 1491391

1490702AATTATTTTCATCTTAAGTTAGATAAAATCAGCATATTTAGTAAAGTTGGTGTAAAATTCGGCTTT1490767
1490768ATTTACATTTCCCTTAGATTAAATAAAGACCTACCAACTACTAAAACTTTTAGATTAAACTTTCAAAA1490835
1490836ATTCACATTTCTCTTAAATTAAATAAAAACTCACTCAAAAAGAGGTACTATAGATCATTCAAGTTT1490901
1490902CTTTACATTTCTCTTAAGTTAAATAAAAACCAATGGGTTCAAGCATTCCGTTACCACCTGAATTA1490966
1490967CTTTACATTTCTCTTAAGTTAAATAAAAACAATGAAAAGGTGGCGCAAGATATGAGTTTTTACGAT1491032
1491033CTTTACATTTCTCTTAAGTTAAATAAAAACTAGTAAGCGTAAGGTTTAAAGTTAGTAAGAATTAA1491097
1491098CTTTACATTTCTCTTAAGTTAAATAAAAACAAGTTTAAAGCTGGCACGTTAATAATTGCTTGTGT1491162
1491163CTTTACATTTCTCTTAAGTTAAATAAAAACTAAAAACGATTTTTTGAGACCTAGCAAGCCGGATCAA1491229
1491230CTTTACATTTCTCTTAAGTTAAATAAAAACTTAGGTACTGACATAAGTCTTCTTTCTAAAATACTA1491295
1491296CTTTACATTTCTCTTAAGTTAAATAAAAACATACCGTGTCTTACTAATATTTTCACGCTTAGCAT1491360
1491361CTTTACATTTCTATTAAGTTACGCGTGGTG1491390
Left flanking sequence : Till position 1490702 (length bp)
TTTAATTGGTAGGATTTTAGTAGGATGTTTGATTGTAGTTTCCTTCCCGTAAATTAAATATAAATCTTTA
TGTTTTATATTTAATTGACTTTAATCACAC
Right flanking sequence : From position 1491391 (length bp)
TAGTTAAATCGTTTTAGTTAATAAAAAAGTCCAATCGGACTAGACTCAAGTTGTAGTATTCAATAGAAAA
GAGTCTGATCTGATTGAACTGCCTTAAGCT
Print the CRISPR sequence : From position bp To position bp