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CRISPRs details
NZ_LT220504_1
Flanking alignement tool
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NZ_LT220504_1                                                                                                                 
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Strain :
Lactobacillus rhamnosus GCF_900070175
RefSeq :
NZ_LT220504 (chromosome linear)
CRISPR id :
NZ_LT220504_1
DR consensus (36 bp) :
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC
Number of repetitions :
18
Begin Position :
11
End Position :
1224
11
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC
CGCCAAACGCTGAAACAGGTGATGACAATGG
77
78
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC
GAGCAAAACATTAAAAACATGCAAGGCGAT
143
144
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC
AGTGTTTGCTGATTACTTGGATACCCTCGCC
210
211
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC
CATTTTGGCTATTTTGAAGATGGCACCACG
276
277
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC
TCAAAAGAGGAAGTGAAGCAGCGCTATCTC
342
343
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC
GATCACCATTTGGCTTGCGAACAACCTTAT
408
409
GTCTCAGTTAGATGTCAGATCAATCAGTTCAAGAAC
GCTCATGCGCTCCAGAAAAGGTCTTATTGA
474
475
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC
GTGACGTTTATTCTAGGGGCGCGCGGTGTG
540
541
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC
TCTTGCAACTTGTCTACCAGGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGACTATTGACGTTGAGCCTAACCTTGTCAGACA
662
663
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC
AAGTCATCAGTGTTTGGACTGTTCCTTACA
728
729
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC
TTTGACCCTGCGTCCCGTGTATTTTGTTC
793
794
CGTCTCAGTAGATGTCAGATCAATCAGTTCAAGAAC
AAAGTTGGCGGCATACGTTCAAGCAACAA
858
859
GGTCTAGGTAGATGTCAGATCAATCAGTTCAAGAAC
AAATTGCCCGACTTGCTGCGCCGTCTAACT
924
925
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC
TTGATCGGTTGCCACTGTGCGGGTCATTG
989
990
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC
AATTGCAGTGACAATGATCGTTGCATTGCT
1055
1056
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC
GCAACTTGTGACCAGCCCCATCTGCTTGCG
1121
1122
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC
GAAAAATGGCGCAAAGATTGTCGATCAAGAG
1188
1189
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC
1224
Left flanking sequence : Till position 11 (length
bp)
TTCCGAATCC
Right flanking sequence : From position 1224 (length
bp)
TTCACTCTCTTCCATGTTCTAAAGTGTAGAGTCTCAGGCAAATATCAGATCAAAAAACACCTTCAGTGAA
GACGCTCCTCATAAATGCTATGCAAATCCC
Print the CRISPR sequence : From position
bp To position
bp